Os03g0111100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase.
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Os03g0111100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.86 | 0.311 | 8.84 | 0.826 | 0.761 | -1.3 | -0.252 | 9.79 | -0.297 | 0.667 | 33.6 | 1167 | -- | -- |
| 47.72 | 0.324 | 8.99 | -0.569 | 0.752 | 0.508 | -0.256 | -- | -0.265 | 0.766 | 33.6 | 1167 | -- | -- |
| 44.1 | 0.309 | 8.84 | 0.844 | 0.76 | -1.29 | -- | 9.76 | -0.295 | 0.642 | 33.6 | 1208 | -- | -- |
| 46.7 | 0.318 | 8.98 | -0.526 | 0.722 | -0.185 | -- | -- | -0.201 | 0.834 | 33.3 | 7607 | -- | -- |
| 79.47 | 0.415 | 8.8 | 0.992 | -- | -1.19 | -- | 10 | -0.26 | -- | 33 | 1273 | -- | -- |
| 48.31 | 0.326 | 8.99 | -0.563 | 0.74 | -- | -0.277 | -- | -0.269 | 0.724 | -- | -- | -- | -- |
| 48.64 | 0.327 | 8.99 | -0.552 | 0.741 | -- | -- | -- | -0.267 | 0.725 | -- | -- | -- | -- |
| 79.11 | 0.414 | 8.96 | -0.439 | -- | -0.229 | -- | -- | -0.176 | -- | 33.9 | 7519 | -- | -- |
| 53.15 | 0.34 | 8.98 | -- | 0.728 | -0.21 | -- | -- | -0.194 | 0.824 | 33.4 | 7188 | -- | -- |
| 83 | 0.426 | 8.98 | -0.526 | -- | -- | -- | -- | -0.254 | -- | -- | -- | -- | -- |
| 56.68 | 0.352 | 8.98 | -- | 0.733 | -- | -- | -- | -0.206 | 0.69 | -- | -- | -- | -- |
| 84.61 | 0.428 | 8.96 | -- | -- | -0.292 | -- | -- | -0.152 | -- | 33.98 | 7493 | -- | -- |
| 90.28 | 0.444 | 8.97 | -- | -- | -- | -- | -- | -0.196 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.04 | wind | 7 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 2 | 42.11 | wind | 7 | 14400 | > th | dose independent | rect. | 11 | 2 |
| 6 | 42.29 | wind | 7 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 9 | 42.47 | wind | 7 | 14400 | > th | dose dependent | rect. | 10 | 3 |
| 19 | 42.78 | wind | 7 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 21 | 42.86 | wind | 9 | 14400 | < th | dose independent | rect. | 7 | 7 |
| 26 | 42.90 | wind | 9 | 14400 | < th | dose independent | rect. | 22 | 16 |
| 27 | 42.91 | wind | 3 | 1440 | > th | dose independent | rect. | 7 | 2 |
| 34 | 43.00 | wind | 9 | 14400 | > th | dose independent | rect. | 22 | 16 |
| 38 | 43.02 | humidity | 80 | 720 | < th | dose dependent | rect. | 16 | 13 |
| 48 | 43.05 | wind | 9 | 14400 | > th | dose independent | rect. | 5 | 9 |
| 59 | 43.10 | wind | 1 | 14400 | > th | dose dependent | rect. | 11 | 2 |
| 65 | 43.12 | wind | 9 | 14400 | < th | dose dependent | rect. | 11 | 2 |
| 72 | 43.16 | wind | 9 | 14400 | > th | dose independent | rect. | 3 | 11 |
| 80 | 43.18 | wind | 3 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 81 | 43.18 | wind | 3 | 1440 | < th | dose independent | rect. | 7 | 2 |
| 84 | 43.20 | humidity | 80 | 720 | < th | dose dependent | sin | 13 | NA |
| 85 | 43.21 | humidity | 80 | 14400 | > th | dose independent | rect. | 3 | 2 |
| 93 | 43.24 | humidity | 80 | 720 | < th | dose independent | rect. | 19 | 1 |
| 99 | 43.26 | wind | 7 | 14400 | > th | dose dependent | rect. | 23 | 15 |
| 103 | 43.27 | humidity | 80 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 108 | 43.28 | humidity | 80 | 14400 | < th | dose independent | rect. | 3 | 2 |
| 116 | 43.29 | humidity | 80 | 720 | < th | dose dependent | rect. | 16 | 4 |
| 130 | 43.31 | humidity | 60 | 720 | > th | dose independent | rect. | 17 | 8 |
| 138 | 43.33 | humidity | 60 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 158 | 43.39 | wind | 9 | 14400 | > th | dose dependent | rect. | 21 | 18 |
| 159 | 43.40 | wind | 3 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 179 | 43.44 | wind | 3 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 182 | 43.45 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 192 | 43.46 | wind | 9 | 14400 | > th | dose independent | sin | 5 | NA |
| 207 | 43.48 | radiation | 10 | 1440 | > th | dose independent | rect. | 17 | 13 |
| 222 | 43.51 | wind | 9 | 14400 | < th | dose independent | sin | 5 | NA |
| 223 | 43.51 | humidity | 80 | 720 | > th | dose independent | rect. | 19 | 1 |
| 224 | 43.51 | wind | 3 | 1440 | > th | dose independent | rect. | 7 | 4 |
| 270 | 43.57 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 281 | 43.58 | radiation | 10 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 302 | 43.59 | wind | 3 | 1440 | < th | dose independent | rect. | 7 | 4 |
| 342 | 43.65 | humidity | 60 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 353 | 43.67 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 7 |
| 355 | 43.67 | temperature | 25 | 270 | > th | dose independent | rect. | 21 | 9 |
| 389 | 43.72 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 6 |
| 398 | 43.74 | temperature | 25 | 270 | > th | dose independent | rect. | 20 | 19 |
| 409 | 43.76 | wind | 3 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 433 | 43.78 | radiation | 10 | 10 | < th | dose independent | rect. | 6 | 20 |
| 463 | 43.81 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 20 |
| 465 | 43.82 | humidity | 60 | 720 | > th | dose independent | rect. | 17 | 2 |
| 468 | 43.82 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 490 | 43.85 | wind | 9 | 14400 | > th | dose dependent | sin | 4 | NA |
| 506 | 43.87 | radiation | 1 | 90 | > th | dose independent | rect. | 16 | 22 |
| 518 | 43.89 | humidity | 60 | 720 | > th | dose independent | rect. | 17 | 16 |
| 554 | 43.93 | humidity | 90 | 30 | < th | dose independent | rect. | 16 | 15 |
| 673 | 44.05 | humidity | 60 | 1440 | > th | dose independent | rect. | 17 | 14 |
| 699 | 44.07 | wind | 3 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 702 | 44.07 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 22 |
| 710 | 44.08 | wind | 3 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 758 | 44.11 | wind | 1 | 14400 | < th | dose independent | rect. | 9 | 2 |
| 779 | 44.13 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 790 | 44.15 | temperature | 25 | 270 | < th | dose independent | rect. | 20 | 14 |
| 795 | 44.15 | radiation | 10 | 1440 | > th | dose dependent | rect. | 17 | 13 |
| 809 | 44.17 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 823 | 44.18 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 6 |
| 824 | 44.18 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 829 | 44.19 | temperature | 25 | 270 | > th | dose independent | sin | 9 | NA |
| 850 | 44.20 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 14 |
| 852 | 44.20 | humidity | 80 | 30 | > th | dose independent | rect. | 15 | 15 |
| 853 | 44.20 | radiation | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 868 | 44.20 | humidity | 70 | 30 | > th | dose dependent | rect. | 15 | 15 |
| 872 | 44.21 | temperature | 25 | 270 | < th | dose independent | sin | 9 | NA |
| 876 | 44.21 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 5 |
| 884 | 44.21 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 8 |
| 902 | 44.22 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 8 |
| 909 | 44.23 | temperature | 20 | 10 | > th | dose independent | rect. | 21 | 9 |
| 910 | 44.23 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 12 |
| 922 | 44.24 | wind | 9 | 14400 | > th | dose independent | rect. | 19 | 21 |
| 949 | 44.26 | temperature | 25 | 1440 | > th | dose independent | rect. | 24 | 1 |
| 955 | 44.26 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 962 | 44.27 | wind | 9 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 987 | 44.28 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 10 |