BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0111100 Os03g0111100|AK102025
(554 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0111100 Similar to Dihydrofolate synthetase /folylpoly... 1039 0.0
Os10g0503200 Similar to Dihydrofolate synthetase /folylpoly... 732 0.0
>Os03g0111100 Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase
Length = 554
Score = 1039 bits (2687), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/497 (100%), Positives = 497/497 (100%)
Query: 58 EYEDVMGRLSSLITQKVRAHSGNRGNQWDLMAHYLQILELEEPIARMKVIHVAGTKGKGS 117
EYEDVMGRLSSLITQKVRAHSGNRGNQWDLMAHYLQILELEEPIARMKVIHVAGTKGKGS
Sbjct: 58 EYEDVMGRLSSLITQKVRAHSGNRGNQWDLMAHYLQILELEEPIARMKVIHVAGTKGKGS 117
Query: 118 TCTFTEAILRSCGFSTGLFTSPHLMDVRERFRLNGVDISEEKFLKYFWWCWNKLKEKTDD 177
TCTFTEAILRSCGFSTGLFTSPHLMDVRERFRLNGVDISEEKFLKYFWWCWNKLKEKTDD
Sbjct: 118 TCTFTEAILRSCGFSTGLFTSPHLMDVRERFRLNGVDISEEKFLKYFWWCWNKLKEKTDD 177
Query: 178 DIPMPTYFRFLALLAFKIFSAEQVDVAVLEVGLGGKFDATNVVEAPVVCGIASLGYDHME 237
DIPMPTYFRFLALLAFKIFSAEQVDVAVLEVGLGGKFDATNVVEAPVVCGIASLGYDHME
Sbjct: 178 DIPMPTYFRFLALLAFKIFSAEQVDVAVLEVGLGGKFDATNVVEAPVVCGIASLGYDHME 237
Query: 238 ILGNTLGEIAGEKAGIFKKGVPAYTAPQPEEAMIALKQRASELGVSLQVAHPLEPHQLKD 297
ILGNTLGEIAGEKAGIFKKGVPAYTAPQPEEAMIALKQRASELGVSLQVAHPLEPHQLKD
Sbjct: 238 ILGNTLGEIAGEKAGIFKKGVPAYTAPQPEEAMIALKQRASELGVSLQVAHPLEPHQLKD 297
Query: 298 QHLGLRGEHQYVNAGLAVALASTWLEKQGHVERIPLNRTDPLPDQFISGLSNASLQGRAQ 357
QHLGLRGEHQYVNAGLAVALASTWLEKQGHVERIPLNRTDPLPDQFISGLSNASLQGRAQ
Sbjct: 298 QHLGLRGEHQYVNAGLAVALASTWLEKQGHVERIPLNRTDPLPDQFISGLSNASLQGRAQ 357
Query: 358 IITDSQVNSGEEDKDCSLVFYLDGAHSPESMEICARWFSHVTKEDRTVPSSMVQSQSCGN 417
IITDSQVNSGEEDKDCSLVFYLDGAHSPESMEICARWFSHVTKEDRTVPSSMVQSQSCGN
Sbjct: 358 IITDSQVNSGEEDKDCSLVFYLDGAHSPESMEICARWFSHVTKEDRTVPSSMVQSQSCGN 417
Query: 418 SQKILLFNCMSVRDPMRLLPHLLDTSTQNGVHFEMALFVPNQSQYNKLGTNSSAPAEPEQ 477
SQKILLFNCMSVRDPMRLLPHLLDTSTQNGVHFEMALFVPNQSQYNKLGTNSSAPAEPEQ
Sbjct: 418 SQKILLFNCMSVRDPMRLLPHLLDTSTQNGVHFEMALFVPNQSQYNKLGTNSSAPAEPEQ 477
Query: 478 IDLSWQLSLQRVWQKLLHGDKGMNNTNSSENSLVFESLPLAMEWLRTNARQNRSTSFQVL 537
IDLSWQLSLQRVWQKLLHGDKGMNNTNSSENSLVFESLPLAMEWLRTNARQNRSTSFQVL
Sbjct: 478 IDLSWQLSLQRVWQKLLHGDKGMNNTNSSENSLVFESLPLAMEWLRTNARQNRSTSFQVL 537
Query: 538 VTGSLHLVGDVLRLVKK 554
VTGSLHLVGDVLRLVKK
Sbjct: 538 VTGSLHLVGDVLRLVKK 554
>Os10g0503200 Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase
Length = 577
Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/497 (72%), Positives = 406/497 (81%), Gaps = 22/497 (4%)
Query: 58 EYEDVMGRLSSLITQKVRAHSGNRGNQWDLMAHYLQILELEEPIARMKVIHVAGTKGKGS 117
EYE+V+G +SSLITQKVRA +GNRGNQW+LMA YLQILELEEPIAR+KV+HVAGTKGKGS
Sbjct: 103 EYEEVLGCISSLITQKVRADTGNRGNQWELMAKYLQILELEEPIARLKVVHVAGTKGKGS 162
Query: 118 TCTFTEAILRSCGFSTGLFTSPHLMDVRERFRLNGVDISEEKFLKYFWWCWNKLKEKTDD 177
TCTF E+ILRSCGF TGLFTSPHLMDVRERFRLNG+DISEEKF++YFWWCWNKLK+KT
Sbjct: 163 TCTFAESILRSCGFRTGLFTSPHLMDVRERFRLNGLDISEEKFIRYFWWCWNKLKDKTGG 222
Query: 178 DIPMPTYFRFLALLAFKIFSAEQVDVAVLEVGLGGKFDATNVVEAPVVCGIASLGYDHME 237
DIPMP YFRFLALLAFKIFS EQ V+APVVCGI+SLGYDHME
Sbjct: 223 DIPMPAYFRFLALLAFKIFSDEQ-------------------VKAPVVCGISSLGYDHME 263
Query: 238 ILGNTLGEIAGEKAGIFKKGVPAYTAPQPEEAMIALKQRASELGVSLQVAHPLEPHQLKD 297
ILGNTLGEIAGEKAGI KKGVPAYT PQPEEAM LK RASELGV LQV PL+P QL D
Sbjct: 264 ILGNTLGEIAGEKAGILKKGVPAYTVPQPEEAMSVLKHRASELGVPLQVVQPLDPQQLDD 323
Query: 298 QHLGLRGEHQYVNAGLAVALASTWLEKQGHVERIPLNRTDPLPDQFISGLSNASLQGRAQ 357
Q LGL GEHQY+NAGLAVAL +TWL++QGH + + LPDQFI GLS+A LQGRAQ
Sbjct: 324 QPLGLHGEHQYMNAGLAVALVNTWLQRQGHFNILHKKHSVTLPDQFIEGLSSACLQGRAQ 383
Query: 358 IITDSQVNSGEEDKDCSLVFYLDGAHSPESMEICARWFSHVTKEDRTVPSSMVQSQSCGN 417
I+ D +V S + SL+FYLDGAHSPESMEICA+WFS VT++D P + Q N
Sbjct: 384 IVPDPEVLSKDSS---SLIFYLDGAHSPESMEICAKWFSCVTRKDEQQPGPLDQLHIGTN 440
Query: 418 SQKILLFNCMSVRDPMRLLPHLLDTSTQNGVHFEMALFVPNQSQYNKLGTNSSAPAEPEQ 477
S+KILLFNCMSVRDP RLLP LL T QNG+ F+ ALFVPNQSQYNKLG+++S P+E Q
Sbjct: 441 SRKILLFNCMSVRDPQRLLPCLLATCAQNGLQFDHALFVPNQSQYNKLGSHASPPSERVQ 500
Query: 478 IDLSWQLSLQRVWQKLLHGDKGMNNTNSSENSLVFESLPLAMEWLRTNARQNRSTSFQVL 537
IDLSWQLSLQRVW+ LLH +KG+N +NSS S VFESLPLA++WLR A+QN+STS+QVL
Sbjct: 501 IDLSWQLSLQRVWEGLLHSNKGLNGSNSSTASSVFESLPLAIKWLRETAQQNQSTSYQVL 560
Query: 538 VTGSLHLVGDVLRLVKK 554
VTGSLHLVGDVLRL+K+
Sbjct: 561 VTGSLHLVGDVLRLLKE 577
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.133 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,884,294
Number of extensions: 703972
Number of successful extensions: 1249
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1247
Number of HSP's successfully gapped: 2
Length of query: 554
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 448
Effective length of database: 11,501,117
Effective search space: 5152500416
Effective search space used: 5152500416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)