Os10g0503200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase.
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Os10g0503200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.81 | 0.335 | 11.6 | -0.412 | 1.74 | -0.38 | 0.609 | 6.4 | -0.306 | 7.54 | 29.38 | 1256 | -- | -- |
| 54.12 | 0.343 | 11.8 | -1.47 | 1.77 | 0.254 | 0.823 | -- | -0.299 | 7.44 | 29.9 | 1137 | -- | -- |
| 51.79 | 0.335 | 11.6 | -0.359 | 1.74 | -0.382 | -- | 6.34 | -0.297 | 7.51 | 29.28 | 1329 | -- | -- |
| 54.1 | 0.343 | 11.8 | -1.52 | 1.77 | 0.325 | -- | -- | -0.354 | 7.5 | 29.19 | 1252 | -- | -- |
| 210.82 | 0.676 | 11.6 | 0.371 | -- | -0.986 | -- | 9.1 | -0.0381 | -- | 26.97 | 2034 | -- | -- |
| 58.55 | 0.359 | 11.8 | -1.48 | 1.76 | -- | 0.601 | -- | -0.408 | 7.42 | -- | -- | -- | -- |
| 59.53 | 0.361 | 11.8 | -1.47 | 1.76 | -- | -- | -- | -0.409 | 7.41 | -- | -- | -- | -- |
| 216.86 | 0.686 | 11.8 | -1.63 | -- | 0.363 | -- | -- | -0.3 | -- | 30.3 | 5754 | -- | -- |
| 115.03 | 0.5 | 11.8 | -- | 1.76 | 0.189 | -- | -- | -0.243 | 7.5 | 35.02 | 1186 | -- | -- |
| 224.84 | 0.701 | 11.8 | -1.44 | -- | -- | -- | -- | -0.381 | -- | -- | -- | -- | -- |
| 116.22 | 0.504 | 11.8 | -- | 1.75 | -- | -- | -- | -0.246 | 7.46 | -- | -- | -- | -- |
| 241.98 | 0.725 | 11.7 | -- | -- | -0.984 | -- | -- | 0.0735 | -- | 4.439 | 47520 | -- | -- |
| 279.4 | 0.78 | 11.8 | -- | -- | -- | -- | -- | -0.221 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.54 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 20 |
| 2 | 50.54 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 20 |
| 3 | 50.55 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 6 | 50.59 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 15 |
| 7 | 50.61 | temperature | 30 | 1440 | > th | dose independent | rect. | 12 | 2 |
| 8 | 50.62 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 9 | 50.62 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 18 |
| 26 | 50.64 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 10 |
| 27 | 50.64 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 12 |
| 40 | 50.73 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 41 | 50.74 | temperature | 30 | 1440 | < th | dose independent | sin | 7 | NA |
| 52 | 50.81 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 15 |
| 53 | 50.82 | temperature | 30 | 1440 | > th | dose independent | sin | 5 | NA |
| 82 | 50.91 | wind | 9 | 43200 | > th | dose independent | rect. | 16 | 5 |
| 86 | 50.94 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 6 |
| 94 | 50.98 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 96 | 50.98 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 117 | 50.98 | wind | 7 | 43200 | > th | dose dependent | rect. | 17 | 5 |
| 132 | 51.01 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 8 |
| 134 | 51.02 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 135 | 51.03 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 136 | 51.03 | wind | 7 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 234 | 51.04 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 15 |
| 255 | 51.06 | wind | 7 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 279 | 51.08 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 3 |
| 297 | 51.11 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 298 | 51.11 | temperature | 30 | 1440 | > th | dose independent | rect. | 12 | 23 |
| 315 | 51.12 | wind | 1 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 320 | 51.12 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 329 | 51.13 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 14 |
| 332 | 51.13 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 21 |
| 355 | 51.14 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 363 | 51.14 | temperature | 30 | 1440 | > th | dose dependent | sin | 19 | NA |
| 366 | 51.14 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 385 | 51.15 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 389 | 51.15 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 19 |
| 390 | 51.15 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 21 |
| 399 | 51.15 | wind | 7 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 432 | 51.16 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 17 |
| 433 | 51.16 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 17 |
| 438 | 51.16 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 19 |
| 447 | 51.16 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 23 |
| 448 | 51.16 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 452 | 51.16 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 571 | 51.16 | temperature | 30 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 577 | 51.17 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 586 | 51.17 | temperature | 30 | 1440 | < th | dose independent | rect. | 5 | 14 |
| 617 | 51.17 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 21 |
| 636 | 51.17 | temperature | 30 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 640 | 51.18 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 12 |
| 778 | 51.24 | wind | 9 | 43200 | > th | dose dependent | sin | 12 | NA |
| 818 | 51.27 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 9 |
| 838 | 51.30 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 979 | 51.39 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 2 |