BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0503200 Os10g0503200|AK072481
(577 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G05980.1 | chr5:1799738-1804441 REVERSE LENGTH=572 564 e-161
AT3G55630.3 | chr3:20636785-20639395 FORWARD LENGTH=493 494 e-140
AT3G10160.1 | chr3:3139588-3143949 REVERSE LENGTH=626 457 e-129
AT5G41480.1 | chr5:16595967-16598523 FORWARD LENGTH=531 97 3e-20
>AT5G05980.1 | chr5:1799738-1804441 REVERSE LENGTH=572
Length = 571
Score = 564 bits (1454), Expect = e-161, Method: Compositional matrix adjust.
Identities = 286/511 (55%), Positives = 354/511 (69%), Gaps = 31/511 (6%)
Query: 98 AAGSAEYEEVLGCISSLITQKVRADTGNRGNQWELMAKYLQILELEEPIARLKVVHVAGT 157
A G YEE L +SSLIT++ RAD N+G+++EL+ YL++L+LEE I ++ V+HVAGT
Sbjct: 61 AQGGDSYEEALAALSSLITKRSRADKSNKGDRFELVFDYLKLLDLEEDILKMNVIHVAGT 120
Query: 158 KGKGSTCTFAESILRSCGFRTGLFTSPHLMDVRERFRLNGLDISEEKFIRYFWWCWNKLK 217
KGKGSTCTF ESI+R+ GFRTGLFTSPHL+DVRERFRL+G+DISEEKF+ YFWWC+N+LK
Sbjct: 121 KGKGSTCTFTESIIRNYGFRTGLFTSPHLIDVRERFRLDGVDISEEKFLGYFWWCYNRLK 180
Query: 218 DKTGGDIPMPAYFRFLALLAFKIFSDEQVKA-------------------PVVCGISSLG 258
++T +IPMP YFRFLALLAFKIF+ E+V A PVVCGISSLG
Sbjct: 181 ERTNEEIPMPTYFRFLALLAFKIFAAEEVDAAILEVGLGGKFDATNAVQKPVVCGISSLG 240
Query: 259 YDHMEILGNTLGEIAGEKAGILKKGVPAYTVPQPEEAMSVLKHRASEXXXXXXXXXXXXX 318
YDHMEILG+TLG+IAGEKAGI K GVPA+TVPQP+EAM VL+ +ASE
Sbjct: 241 YDHMEILGDTLGKIAGEKAGIFKLGVPAFTVPQPDEAMRVLEEKASETEVNLEVVQPLTA 300
Query: 319 XXXXXXXXXXHGEHQYMNAGLAVALVNTWLQRQGHFNILHKKHSVTLPDQFIEGLSSACL 378
GEHQY+NAGLAV+L + WLQ+ G + + LP++FI+GL++A L
Sbjct: 301 RLLSGQKLGLDGEHQYVNAGLAVSLASIWLQQIGKLEVPSRTQMSILPEKFIKGLATASL 360
Query: 379 QGRAQIVPDPEVLSKDSSSLIFYLDGAHSPESMEICAKWFSCVTRKDEQ--QPGPLDQLH 436
QGRAQ+VPD S+ S L+FYLDGAHSPESME CAKWFS + D Q G L
Sbjct: 361 QGRAQVVPDQYTESRTSGDLVFYLDGAHSPESMEACAKWFSVAVKGDNQSGSSGHLVNGS 420
Query: 437 IGTNSRK--------ILLFNCMSVRDPQRLLPCLLATCAQNGLQFDHALFVPNQSQYNKL 488
G++ K ILLFNCMSVRDP LLP L CA+ G+ F ALFVPN S Y+K+
Sbjct: 421 AGSSHDKWSNETCEQILLFNCMSVRDPNLLLPHLKNMCAKYGVNFKKALFVPNMSVYHKV 480
Query: 489 GSHASPPSERVQIDLSWQLSLQRVWEGLLHSNK-GLNGSNSSTASSVFESLPLAIKWLRE 547
G+ A P Q+DLSWQ +LQ+VWE L+ S + G S S VF SLP+AIK LR+
Sbjct: 481 GTAADLPENDPQVDLSWQFTLQKVWESLVQSERDGEKDGESDGNSEVFTSLPMAIKCLRD 540
Query: 548 TAQQNQS-TSYQVLVTGSLHLVGDVLRLLKE 577
T ++ S T +QVLVTGSLHLVGDVLRL+++
Sbjct: 541 TVHESSSATRFQVLVTGSLHLVGDVLRLIRK 571
>AT3G55630.3 | chr3:20636785-20639395 FORWARD LENGTH=493
Length = 492
Score = 494 bits (1271), Expect = e-140, Method: Compositional matrix adjust.
Identities = 257/501 (51%), Positives = 333/501 (66%), Gaps = 42/501 (8%)
Query: 101 SAEYEEVLGCISSLITQKVRADTGNRGNQWELMAKYLQILELEEPIARLKVVHVAGTKGK 160
SA Y+ L +SSLIT++ R + N+ +++ L+ YL++LELE+ ++++K++HVAGTKGK
Sbjct: 10 SARYQNTLDALSSLITKRGRLASNNQSHRFRLLFHYLKVLELEDAVSQMKIIHVAGTKGK 69
Query: 161 GSTCTFAESILRSCGFRTGLFTSPHLMDVRERFRLNGLDISEEKFIRYFWWCWNKLKDKT 220
GSTCTFAESILR G RTGLFTSPHL+DVRERFRLNG++IS+EKF+ YFW C++KLK+KT
Sbjct: 70 GSTCTFAESILRCYGLRTGLFTSPHLIDVRERFRLNGIEISQEKFVNYFWCCFHKLKEKT 129
Query: 221 GGDIPMPAYFRFLALLAFKIFSDEQV-------------------KAPVVCGISSLGYDH 261
++PMP YF FLALLAFKIF+ EQV + PVVCGISSLGYDH
Sbjct: 130 SNEVPMPTYFCFLALLAFKIFTTEQVDVVILEVGLGGRFDATNVIQKPVVCGISSLGYDH 189
Query: 262 MEILGNTLGEIAGEKAGILKKGVPAYTVPQPEEAMSVLKHRASEXXXXXXXXXXXXXXXX 321
MEILG TL EIA EKAGI K GVPA+TV QP+EAM VL +AS+
Sbjct: 190 MEILGYTLAEIAAEKAGIFKSGVPAFTVAQPDEAMRVLNEKASK----LEVNLQVVEPLD 245
Query: 322 XXXXXXXHGEHQYMNAGLAVALVNTWLQRQGHFNILHKKHSVTLPDQFIEGLSSACLQGR 381
GEHQY+NAGLAVAL +T+L+ G + + LP++FI GLS+A L GR
Sbjct: 246 SSQRLGLQGEHQYLNAGLAVALCSTFLKEIGIEDKNGLDQTNGLPEKFISGLSNAYLMGR 305
Query: 382 AQIVPDPEVLSKDSSSLIFYLDGAHSPESMEICAKWFSCVTRKDEQQPGPLDQLHIGTNS 441
A IVPD E+ +++YLDGAHSPESME CA WFS ++++++ S
Sbjct: 306 AMIVPDSEL----PEEIVYYLDGAHSPESMEACAIWFSKQIKQNQERNQK--------RS 353
Query: 442 RKILLFNCMSVRDPQRLLPCLLATCAQNGLQFDHALFVPNQSQYNKLGSHASPPSERVQI 501
+ILLFNCMSVRDP LLP L + C G+ F A+FVPN S YN++GS + + RV+
Sbjct: 354 EQILLFNCMSVRDPSLLLPRLRSKCIDQGVDFKRAVFVPNVSVYNQVGSSTNVGT-RVE- 411
Query: 502 DLSWQLSLQRVWEGLLHSNKGLNGSNSSTA-----SSVFESLPLAIKWLRETAQQNQSTS 556
+SWQ LQR+WE L N + S S VF SLP+A+ WLR+ A+Q++
Sbjct: 412 SMSWQFGLQRIWESLARGEAKSNSKSDSKGKEEEKSFVFSSLPVAVDWLRDNARQSKQVR 471
Query: 557 YQVLVTGSLHLVGDVLRLLKE 577
+QVLVTGSLHLVGD+LR +K+
Sbjct: 472 FQVLVTGSLHLVGDLLRFIKK 492
>AT3G10160.1 | chr3:3139588-3143949 REVERSE LENGTH=626
Length = 625
Score = 457 bits (1175), Expect = e-129, Method: Compositional matrix adjust.
Identities = 259/546 (47%), Positives = 329/546 (60%), Gaps = 71/546 (13%)
Query: 102 AEYEEVLGCISSLITQKVRAD----TGNRGNQWELMAKYLQILELEEPIARLKVVHVAGT 157
+ Y++ + +S+LI+++ R D GNR ++ E + YL+IL+LE+ I LKV+HVAGT
Sbjct: 81 SSYDDAMEALSTLISRRNRGDRTPTKGNR-DKLEQVVTYLKILDLEDKIKELKVIHVAGT 139
Query: 158 KGKGSTCTFAESILRSCGFRTGLFTSPHLMDVRERFRLNGLDISEEKFIRYFWWCWNKLK 217
KGKGSTC F+E+ILR+CGFRTG+FTSPHL+DVRERFR++GLDISEEKF++YFW CW LK
Sbjct: 140 KGKGSTCVFSEAILRNCGFRTGMFTSPHLIDVRERFRIDGLDISEEKFLQYFWECWKLLK 199
Query: 218 DKTGGDIPMPAYFRFLALLAFKIFSDEQV-------------------KAPVVCGISSLG 258
+K + MP F+FL +LAFKIF E+V + PVVCGI+SLG
Sbjct: 200 EKAVDGLTMPPLFQFLTVLAFKIFVCEKVDVAVIEVGLGGKLDSTNVIQKPVVCGIASLG 259
Query: 259 YDHMEILGNTLGEIAGEKAGILKKGVPAYTVPQPEEAMSVLKHRASEXXXXXXXXXXXXX 318
DHM+ILGNTL +IA KAGI K +PA+TVPQ EAM VL+ A+
Sbjct: 260 MDHMDILGNTLADIAFHKAGIFKPQIPAFTVPQLSEAMDVLQKTANNLEVPLEVVAPLEP 319
Query: 319 XXXXXXXXXXHGEHQYMNAGLAVALVNTWLQRQGHFNILHKKHS--VTLPDQFIEGLSSA 376
G+HQ +NAGLAV+L WLQR G++ + S +P F GL++A
Sbjct: 320 KKLDGVTLGLSGDHQLVNAGLAVSLSRCWLQRTGNWKKIFPNESKETEIPVAFCRGLATA 379
Query: 377 CLQGRAQIVPDPEVLSKDSS--------SLIFYLDGAHSPESMEICAKWFSCVTRKDEQQ 428
L GRAQ+V D +DSS LIFYLDGAHSPESME C +WFS R D+
Sbjct: 380 RLHGRAQVVHDVVSDPQDSSDSMETPCGDLIFYLDGAHSPESMEACGRWFSSAVRGDKSL 439
Query: 429 P----GPLDQLHIGTN----SRKILLFNCMSVRDPQRLLPCLLATCAQNGLQFDHALFVP 480
G + GT+ S++ILLFNCM VRDPQ LLP L+ TCA +G F ALFVP
Sbjct: 440 STAVNGYMRHGEYGTDLNRVSKQILLFNCMEVRDPQVLLPKLVTTCASSGTHFSRALFVP 499
Query: 481 NQSQYNKLGSHASP-PSERVQIDLSWQLSLQRVWE--------GLLHSNK---------- 521
+ S YNK+ S AS PS+ + DL+WQ LQR+WE GL H+ K
Sbjct: 500 SMSTYNKVISGASAIPSDTRRKDLTWQFRLQRLWEKSIQGTDAGLDHTLKPDGITALPPH 559
Query: 522 ----------GLNGSNSSTASSVFESLPLAIKWLRETAQQNQSTSYQVLVTGSLHLVGDV 571
G T+S+V SLPL I WLR+ ++N S +VLVTGSLHLVGDV
Sbjct: 560 DFLCGDAPQCGGPAGTPVTSSAVMPSLPLTINWLRDCVRRNPSLKLEVLVTGSLHLVGDV 619
Query: 572 LRLLKE 577
LRLLK
Sbjct: 620 LRLLKR 625
>AT5G41480.1 | chr5:16595967-16598523 FORWARD LENGTH=531
Length = 530
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 83/168 (49%), Gaps = 21/168 (12%)
Query: 139 ILELEEPIARLKVVHVAGTKGKGSTCTFAESILRSCGFRTGLFTSPHLMDVRERFRLNGL 198
+L L P + KVVHVAGTKGKGST F +ILR+ G+ G ++SPH++ ++ER NG
Sbjct: 84 MLRLRNPHYKYKVVHVAGTKGKGSTSAFLSNILRAGGYSVGCYSSPHILSIKERISCNGE 143
Query: 199 DISEEKFIRYFWWCWNKLKDKTGGDIPMPAYFRFLALLAFKIFSDEQVKAPVVCG----- 253
+S F+ L+ + ++F L +AF +F E V V+
Sbjct: 144 PVSASTLNDLFYSVKPILEQSIQEENGSLSHFEILTGIAFSLFEKENVDIAVIEAGLGGA 203
Query: 254 ----------------ISSLGYDHMEILGNTLGEIAGEKAGILKKGVP 285
I+++G +HM LG +L IA K+GI+K G P
Sbjct: 204 RDATNVIESSNLAASVITTIGEEHMAALGGSLESIAEAKSGIIKHGRP 251
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.134 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,794,989
Number of extensions: 433186
Number of successful extensions: 882
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 862
Number of HSP's successfully gapped: 4
Length of query: 577
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 473
Effective length of database: 8,255,305
Effective search space: 3904759265
Effective search space used: 3904759265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)