BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0495300 Os10g0495300|AK103856
(923 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0495300 BRO1 domain containing protein 1382 0.0
Os02g0638400 BRO1 domain containing protein 249 9e-66
>Os10g0495300 BRO1 domain containing protein
Length = 923
Score = 1382 bits (3578), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 708/878 (80%), Positives = 708/878 (80%)
Query: 46 NVMLAIHEKRTTPTDLYRPLRLYIASAYSEREXXXXXXXXXXXXXXXXXXEQPSLPDPSS 105
NVMLAIHEKRTTPTDLYRPLRLYIASAYSERE EQPSLPDPSS
Sbjct: 46 NVMLAIHEKRTTPTDLYRPLRLYIASAYSEREAAAADDDLAAVRDLRADVEQPSLPDPSS 105
Query: 106 XXXXXXXXXXXXXXXSLVEPRFPISSDRAHVHSLAFTWHDAFKTGKKASVASIHLEKAAV 165
SLVEPRFPISSDRAHVHSLAFTWHDAFKTGKKASVASIHLEKAAV
Sbjct: 106 LERRRDALLAYARALSLVEPRFPISSDRAHVHSLAFTWHDAFKTGKKASVASIHLEKAAV 165
Query: 166 LFNLAAVYSQIALAADRATDVGIRTACGSFQSAAGAFAWMRESGXXXXXXXXXXXXXXXX 225
LFNLAAVYSQIALAADRATDVGIRTACGSFQSAAGAFAWMRESG
Sbjct: 166 LFNLAAVYSQIALAADRATDVGIRTACGSFQSAAGAFAWMRESGVAAKAVAAGATTVDVT 225
Query: 226 PECAAMLEKLMLAQAQECFFEKVIAGGKPPALCSKVARQVGIFYEEAYAALSAAPLSQHF 285
PECAAMLEKLMLAQAQECFFEKVIAGGKPPALCSKVARQVGIFYEEAYAALSAAPLSQHF
Sbjct: 226 PECAAMLEKLMLAQAQECFFEKVIAGGKPPALCSKVARQVGIFYEEAYAALSAAPLSQHF 285
Query: 286 DKTWVSHVQLKAAQFYADACYRCSLDLHEKEEIAQEIARLKIGISALADAKKVARGVAAP 345
DKTWVSHVQLKAAQFYADACYRCSLDLHEKEEIAQEIARLKIGISALADAKKVARGVAAP
Sbjct: 286 DKTWVSHVQLKAAQFYADACYRCSLDLHEKEEIAQEIARLKIGISALADAKKVARGVAAP 345
Query: 346 LLDSVNKLESNMKTNLERAMKENDRVYLMRVPDXXXXXXXXXXXXVKPTSLAEVLDASKE 405
LLDSVNKLESNMKTNLERAMKENDRVYLMRVPD VKPTSLAEVLDASKE
Sbjct: 346 LLDSVNKLESNMKTNLERAMKENDRVYLMRVPDASSLGALPAASLVKPTSLAEVLDASKE 405
Query: 406 RLFSSLVPDGSMKALSKYTEMVDNIIRTQAEKLQQASEITRVRLKEMDLPDSILSLEGNI 465
RLFSSLVPDGSMKALSKYTEMVDNIIRTQAEKLQQASEITRVRLKEMDLPDSILSLEGNI
Sbjct: 406 RLFSSLVPDGSMKALSKYTEMVDNIIRTQAEKLQQASEITRVRLKEMDLPDSILSLEGNI 465
Query: 466 TLPLDLKEDVEAVQISGGPAGLEAELQQLRDLSRVNQELLVQTEEMLQKEANEDAQFRTQ 525
TLPLDLKEDVEAVQISGGPAGLEAELQQLRDLSRVNQELLVQTEEMLQKEANEDAQFRTQ
Sbjct: 466 TLPLDLKEDVEAVQISGGPAGLEAELQQLRDLSRVNQELLVQTEEMLQKEANEDAQFRTQ 525
Query: 526 FGSRWTRPQSSTLTKNIQDRLNLFASNLKTAGDSDSQIERGLKESYPLISILDRRPIESA 585
FGSRWTRPQSSTLTKNIQDRLNLFASNLKTAGDSDSQIERGLKESYPLISILDRRPIESA
Sbjct: 526 FGSRWTRPQSSTLTKNIQDRLNLFASNLKTAGDSDSQIERGLKESYPLISILDRRPIESA 585
Query: 586 LPSISRPIMSLDGNEDAIVGALKQSLRQLESLGAQRAGLEDMLKEMKRKDDILPKLMAGV 645
LPSISRPIMSLDGNEDAIVGALKQSLRQLESLGAQRAGLEDMLKEMKRKDDILPKLMAGV
Sbjct: 586 LPSISRPIMSLDGNEDAIVGALKQSLRQLESLGAQRAGLEDMLKEMKRKDDILPKLMAGV 645
Query: 646 GSHDDLFKKEISKYDPVCAEIADNIVXXXXXXXXXXXXXXXFAAVFNLEDYKVARERCYK 705
GSHDDLFKKEISKYDPVCAEIADNIV FAAVFNLEDYKVARERCYK
Sbjct: 646 GSHDDLFKKEISKYDPVCAEIADNIVAQEQLLLQIQAQNEQFAAVFNLEDYKVARERCYK 705
Query: 706 QIAAAVAKYRDIKKNINEGLNFYVTLQEAIGKIKQQCSDFIMTRNIQCREMIEDVQKKLA 765
QIAAAVAKYRDIKKNINEGLNFYVTLQEAIGKIKQQCSDFIMTRNIQCREMIEDVQKKLA
Sbjct: 706 QIAAAVAKYRDIKKNINEGLNFYVTLQEAIGKIKQQCSDFIMTRNIQCREMIEDVQKKLA 765
Query: 766 GXXXXXXXXQASMQRNTXXXXXXXXXXXXXXXXXXXHAQGPYGVPPGGDSRPGYSQPEQR 825
G QASMQRNT HAQGPYGVPPGGDSRPGYSQPEQR
Sbjct: 766 GFSFSSSSSQASMQRNTSVPPDQNSPSPPPPSSHAPHAQGPYGVPPGGDSRPGYSQPEQR 825
Query: 826 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAXXXXXXXXXXXXXXXXXDYGQQAYPGGWRG 885
A DYGQQAYPGGWRG
Sbjct: 826 PAYSQPYPPYGAPPQQPPYGAPSQQPPYGAPHPGHYQQPPHQQPPNHDYGQQAYPGGWRG 885
Query: 886 XXXXXXXXXXXXXXXXXXXXXNAQGSYPPHQSSYYRPQ 923
NAQGSYPPHQSSYYRPQ
Sbjct: 886 QYYNPHQPQPQPQPPYPQPPYNAQGSYPPHQSSYYRPQ 923
>Os02g0638400 BRO1 domain containing protein
Length = 353
Score = 249 bits (635), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 130/267 (48%), Positives = 171/267 (64%), Gaps = 2/267 (0%)
Query: 139 LAFTWHDAFKTGKKASVASIHLEKAAVLFNLAAVYSQIALAADRATDVGIRTACGSFQSA 198
LAFTWHDAF+ + + AS+ EKAAV+FN+ A S+IA A DRA G++ ACG FQ A
Sbjct: 83 LAFTWHDAFRPHLRRTAASLRFEKAAVVFNVGAASSRIAAAVDRAAVGGVKAACGEFQRA 142
Query: 199 AGAFAWMRESGXXXXXXXXXXXXXXXXPECAAMLEKLMLAQAQECFFEKVIAGGKPPALC 258
AGAF PE +AMLE+LMLAQAQEC FE+ +A G A C
Sbjct: 143 AGAF--RAAGEMMEGEEEDTEDTVDMGPEASAMLERLMLAQAQECCFERALAAGTSSAAC 200
Query: 259 SKVARQVGIFYEEAYAALSAAPLSQHFDKTWVSHVQLKAAQFYADACYRCSLDLHEKEEI 318
SKVA+Q ++YEEAYA+L PL HF+++WV+H+ LKAA F A+A Y +++LHEK EI
Sbjct: 201 SKVAKQAALYYEEAYASLVIPPLQNHFERSWVAHILLKAALFNAEASYHYAIELHEKTEI 260
Query: 319 AQEIARLKIGISALADAKKVARGVAAPLLDSVNKLESNMKTNLERAMKENDRVYLMRVPD 378
+EIARL+ GI+A+ DAKK RG L D+ ++LE +M NLERA+ EN+R+YL+RVP
Sbjct: 261 GEEIARLQFGINAIVDAKKAVRGAPGSLYDAASRLEQDMNQNLERALNENNRIYLLRVPA 320
Query: 379 XXXXXXXXXXXXVKPTSLAEVLDASKE 405
V+ SL+E+LD E
Sbjct: 321 AKLLAPLPAASLVRSASLSEILDVKTE 347
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.131 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 22,283,827
Number of extensions: 719351
Number of successful extensions: 2133
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2128
Number of HSP's successfully gapped: 2
Length of query: 923
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 813
Effective length of database: 11,292,261
Effective search space: 9180608193
Effective search space used: 9180608193
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 161 (66.6 bits)