Os02g0638400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : BRO1 domain containing protein.
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Os02g0638400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : BRO1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.41 | 0.28 | 9.7 | 0.0873 | 0.258 | 0.642 | 0.00644 | 0.625 | 0.172 | 22 | 20.3 | 1376 | -- | -- |
| 36.06 | 0.28 | 9.71 | 0.0148 | 0.264 | 0.522 | 0.0247 | -- | 0.16 | 22 | 20.5 | 1353 | -- | -- |
| 35.37 | 0.277 | 9.7 | 0.0954 | 0.259 | 0.616 | -- | 0.592 | 0.169 | 22 | 20.5 | 1370 | -- | -- |
| 35.98 | 0.279 | 9.73 | -0.00638 | 0.241 | 0.513 | -- | -- | 0.133 | 21.8 | 20.96 | 1252 | -- | -- |
| 38.37 | 0.288 | 9.7 | 0.0919 | -- | 0.547 | -- | 0.39 | 0.159 | -- | 21 | 940 | -- | -- |
| 42.51 | 0.306 | 9.69 | 0.208 | 0.271 | -- | 0.0399 | -- | 0.27 | 22.3 | -- | -- | -- | -- |
| 42.52 | 0.305 | 9.69 | 0.206 | 0.271 | -- | -- | -- | 0.269 | 22.3 | -- | -- | -- | -- |
| 38.7 | 0.29 | 9.71 | 0.012 | -- | 0.517 | -- | -- | 0.147 | -- | 20.75 | 819 | -- | -- |
| 35.97 | 0.279 | 9.72 | -- | 0.245 | 0.498 | -- | -- | 0.144 | 21.9 | 20.95 | 1252 | -- | -- |
| 46.99 | 0.32 | 9.69 | 0.21 | -- | -- | -- | -- | 0.27 | -- | -- | -- | -- | -- |
| 43.64 | 0.309 | 9.7 | -- | 0.272 | -- | -- | -- | 0.246 | 22.4 | -- | -- | -- | -- |
| 38.69 | 0.29 | 9.71 | -- | -- | 0.534 | -- | -- | 0.15 | -- | 20.59 | 829 | -- | -- |
| 48.16 | 0.324 | 9.69 | -- | -- | -- | -- | -- | 0.247 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.41 | wind | 9 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 9 | 34.53 | wind | 7 | 14400 | > th | dose dependent | rect. | 10 | 3 |
| 14 | 34.69 | wind | 9 | 14400 | < th | dose independent | rect. | 10 | 3 |
| 39 | 35.11 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 7 |
| 46 | 35.16 | wind | 5 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 48 | 35.20 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 7 |
| 56 | 35.26 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 63 | 35.30 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 72 | 35.31 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 119 | 35.38 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 144 | 35.40 | humidity | 80 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 157 | 35.41 | wind | 9 | 14400 | < th | dose independent | rect. | 22 | 16 |
| 160 | 35.42 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 3 |
| 198 | 35.45 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 218 | 35.47 | wind | 5 | 43200 | < th | dose dependent | rect. | 23 | 4 |
| 228 | 35.48 | wind | 3 | 43200 | < th | dose dependent | rect. | 22 | 6 |
| 355 | 35.59 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 397 | 35.63 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 443 | 35.67 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 2 |
| 462 | 35.68 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 476 | 35.70 | wind | 3 | 43200 | < th | dose independent | rect. | 23 | 4 |
| 485 | 35.70 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 501 | 35.72 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 547 | 35.78 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 575 | 35.83 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 646 | 35.94 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 2 |
| 665 | 35.97 | wind | 9 | 14400 | > th | dose independent | rect. | 21 | 17 |
| 698 | 36.03 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 715 | 36.06 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 2 |
| 731 | 36.09 | wind | 9 | 14400 | < th | dose independent | sin | 4 | NA |
| 747 | 36.10 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 762 | 36.11 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 773 | 36.13 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 838 | 36.26 | humidity | 80 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 903 | 36.32 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 4 |
| 933 | 36.35 | humidity | 80 | 14400 | > th | dose independent | rect. | 4 | 3 |