BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0638400 Os02g0638400|AK060633
         (353 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G15130.1  | chr1:5206217-5209848 REVERSE LENGTH=847            147   6e-36

>AT1G15130.1 | chr1:5206217-5209848 REVERSE LENGTH=847
          Length = 846

 Score =  147 bits (372), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 86/233 (36%), Positives = 124/233 (53%), Gaps = 1/233 (0%)

Query: 83  LAFTWHDAFRPHLRRTAASLRFEKAAVVFNXXXXXXXXXXXXXXXXXXXXXXXCXXXXXX 142
           ++F W+DAF+   + T  ++  EKAAV+FN                              
Sbjct: 98  VSFVWYDAFKQKHKATQQNIHLEKAAVLFNLGASYSQIGLGHDRTTVDGRRQASHAFMAA 157

Query: 143 XXXXXXXXXXXXXXXXXX-XXXVDMGPEASAMLERLMLAQAQECCFERALAAGTSSAACS 201
                                 VD+  E   MLERLM+AQAQEC FE  +A G++    +
Sbjct: 158 AGAFAHLRDNESIKATIGPSTTVDVSVECVGMLERLMVAQAQECVFENTIAKGSTPGVSA 217

Query: 202 KVAKQXXXXXXXXXXSLVIPPLQNHFERSWVAHILLKAALFNAEASYHYAIELHEKTEIG 261
           K+A+Q          +L+I PL++HF++ W++H+ LKAALF  EA + Y  ELHEK EI 
Sbjct: 218 KIARQVGIFYEEALSALIISPLKDHFDKGWISHVQLKAALFYGEACFRYGKELHEKEEIA 277

Query: 262 EEIARLQFGINAIVDAKKAVRGAPGSLYDAASRLEQDMNQNLERALNENNRIY 314
           EEIARL+ G + + +AKK+ RGAP  L +A + LE  +N NL+RA+ EN+R+Y
Sbjct: 278 EEIARLRSGASRLAEAKKSSRGAPAQLIEAMNTLESSINGNLDRAVKENDRVY 330



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.128    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,364,374
Number of extensions: 110050
Number of successful extensions: 270
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 270
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 253
Effective length of database: 8,364,969
Effective search space: 2116337157
Effective search space used: 2116337157
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)