Os10g0495300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : BRO1 domain containing protein.
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Os10g0495300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : BRO1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.3 | 0.201 | 11.4 | 1.35 | 0.171 | -0.84 | 0.282 | 1.61 | 0.463 | 2.82 | 20.13 | 269 | -- | -- |
| 19.68 | 0.207 | 11.4 | 1.06 | 0.175 | -0.844 | -0.125 | -- | 0.377 | 4.13 | 17.32 | 198 | -- | -- |
| 18.55 | 0.201 | 11.4 | 1.34 | 0.166 | -0.843 | -- | 1.51 | 0.458 | 2.62 | 20.11 | 272 | -- | -- |
| 19.72 | 0.207 | 11.4 | 1.06 | 0.179 | -0.818 | -- | -- | 0.374 | 4.1 | 17.72 | 198 | -- | -- |
| 19.67 | 0.207 | 11.4 | 1.38 | -- | -0.908 | -- | 1.68 | 0.476 | -- | 20.93 | 213 | -- | -- |
| 29.08 | 0.253 | 11.5 | 0.869 | 0.46 | -- | 0.0483 | -- | 0.245 | 4.08 | -- | -- | -- | -- |
| 29.09 | 0.253 | 11.5 | 0.868 | 0.46 | -- | -- | -- | 0.245 | 4.08 | -- | -- | -- | -- |
| 20.89 | 0.213 | 11.4 | 1.1 | -- | -0.97 | -- | -- | 0.406 | -- | 18.1 | 190 | -- | -- |
| 46.09 | 0.318 | 11.5 | -- | 0.341 | -0.415 | -- | -- | 0.208 | 4.78 | 21.11 | 40 | -- | -- |
| 40.6 | 0.298 | 11.5 | 0.887 | -- | -- | -- | -- | 0.257 | -- | -- | -- | -- | -- |
| 48.97 | 0.327 | 11.5 | -- | 0.477 | -- | -- | -- | 0.148 | 4.05 | -- | -- | -- | -- |
| 49.37 | 0.327 | 11.5 | -- | -- | -0.66 | -- | -- | 0.223 | -- | 23.62 | 149 | -- | -- |
| 61.36 | 0.366 | 11.5 | -- | -- | -- | -- | -- | 0.158 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.01 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 2 | 18.25 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 3 | 18.28 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 4 | 18.31 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 7 | 18.38 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 8 | 18.40 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 11 | 18.43 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 13 | 18.45 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 15 |
| 15 | 18.47 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 12 |
| 19 | 18.48 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 5 |
| 33 | 18.53 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 51 | 18.59 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 52 | 18.59 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 71 | 18.65 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 20 |
| 130 | 18.82 | temperature | 20 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 152 | 18.89 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 6 |
| 159 | 18.91 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 6 |
| 164 | 18.93 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 180 | 18.98 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 212 | 19.05 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 246 | 19.12 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 298 | 19.22 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 337 | 19.29 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 356 | 19.31 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 483 | 19.48 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 497 | 19.50 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 13 |
| 576 | 19.59 | temperature | 25 | 1440 | > th | dose independent | sin | 17 | NA |
| 606 | 19.61 | temperature | 25 | 1440 | < th | dose independent | sin | 17 | NA |
| 608 | 19.61 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 14 |
| 655 | 19.64 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 745 | 19.69 | temperature | 30 | 1440 | < th | dose dependent | sin | 15 | NA |
| 920 | 19.79 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 965 | 19.80 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 23 |