BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0492300 Os10g0492300|AK120578
         (427 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0492300  Conserved hypothetical protein                      648   0.0  
AK120231                                                          538   e-153
Os10g0492000  Similar to Chloroplast inner envelope protein,...   179   5e-45

>Os10g0492300 Conserved hypothetical protein
          Length = 427

 Score =  648 bits (1672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/380 (85%), Positives = 326/380 (85%)

Query: 48  GEEVFGGRRELAGVQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNS 107
           GEEVFGGRRELAGVQP                                          NS
Sbjct: 48  GEEVFGGRRELAGVQPLVEALPPVARAVVELAVVAAAAAAGYVVGLRAGGTRTTTAAVNS 107

Query: 108 AVPGVAAAGLHNYVAGSDDPTKLESSEVEAIASKYGVSTEDATFKAELCDLYGRFVFSLI 167
           AVPGVAAAGLHNYVAGSDDPTKLESSEVEAIASKYGVSTEDATFKAELCDLYGRFVFSLI
Sbjct: 108 AVPGVAAAGLHNYVAGSDDPTKLESSEVEAIASKYGVSTEDATFKAELCDLYGRFVFSLI 167

Query: 168 HPGYEDLEGTEVETIIKFKKALGLNDIDAANVHMEIAKRIDRNAGVGQQQAFEKLIFVTN 227
           HPGYEDLEGTEVETIIKFKKALGLNDIDAANVHMEIAKRIDRNAGVGQQQAFEKLIFVTN
Sbjct: 168 HPGYEDLEGTEVETIIKFKKALGLNDIDAANVHMEIAKRIDRNAGVGQQQAFEKLIFVTN 227

Query: 228 LVFRDAYEYLLPWKRLFGVHESQIDDVMREXXXXXXXXXXXXIGRGLDIGTLIEVRRSQL 287
           LVFRDAYEYLLPWKRLFGVHESQIDDVMRE            IGRGLDIGTLIEVRRSQL
Sbjct: 228 LVFRDAYEYLLPWKRLFGVHESQIDDVMRESAKSLYASLLKSIGRGLDIGTLIEVRRSQL 287

Query: 288 AYKLSDEIASEMFREHAKKLVEENISTALNNLNNRTQVVEEVKSILSFNGMLTVLSNFPG 347
           AYKLSDEIASEMFREHAKKLVEENISTALNNLNNRTQVVEEVKSILSFNGMLTVLSNFPG
Sbjct: 288 AYKLSDEIASEMFREHAKKLVEENISTALNNLNNRTQVVEEVKSILSFNGMLTVLSNFPG 347

Query: 348 EERFVRGLGPITLGGDSDHEKRVEDLKMLYSAYAMEVLSDGHLNDDKLAALNQLRNIFGL 407
           EERFVRGLGPITLGGDSDHEKRVEDLKMLYSAYAMEVLSDGHLNDDKLAALNQLRNIFGL
Sbjct: 348 EERFVRGLGPITLGGDSDHEKRVEDLKMLYSAYAMEVLSDGHLNDDKLAALNQLRNIFGL 407

Query: 408 AKYEAEAIITDVKARVFQTY 427
           AKYEAEAIITDVKARVFQTY
Sbjct: 408 AKYEAEAIITDVKARVFQTY 427



>AK120231 
          Length = 359

 Score =  538 bits (1387), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 263/276 (95%), Positives = 264/276 (95%)

Query: 152 KAELCDLYGRFVFSLIHPGYEDLEGTEVETIIKFKKALGLNDIDAANVHMEIAKRIDRNA 211
           +AELCDLYGRFVFSLIHPGYEDLEGTEVETIIKFKKALGLNDIDAANVHMEIAKRIDRNA
Sbjct: 84  RAELCDLYGRFVFSLIHPGYEDLEGTEVETIIKFKKALGLNDIDAANVHMEIAKRIDRNA 143

Query: 212 GVGQQQAFEKLIFVTNLVFRDAYEYLLPWKRLFGVHESQIDDVMREXXXXXXXXXXXXIG 271
           GVGQQQAFEKLIFVTNLVFRDAYEYLLPWKRLFGVHESQIDDVMRE            IG
Sbjct: 144 GVGQQQAFEKLIFVTNLVFRDAYEYLLPWKRLFGVHESQIDDVMRESAKSLYASLLKSIG 203

Query: 272 RGLDIGTLIEVRRSQLAYKLSDEIASEMFREHAKKLVEENISTALNNLNNRTQVVEEVKS 331
           RGLDIGTLIEVRRSQLAYKLSDEIASEMFREHAKKLVEENISTALNNLNNRTQVVEEVKS
Sbjct: 204 RGLDIGTLIEVRRSQLAYKLSDEIASEMFREHAKKLVEENISTALNNLNNRTQVVEEVKS 263

Query: 332 ILSFNGMLTVLSNFPGEERFVRGLGPITLGGDSDHEKRVEDLKMLYSAYAMEVLSDGHLN 391
           ILSFNGMLTVLSNFPGEERFVRGLGPITLGGDSDHEKRVEDLKMLYSAYAMEVLSDGHLN
Sbjct: 264 ILSFNGMLTVLSNFPGEERFVRGLGPITLGGDSDHEKRVEDLKMLYSAYAMEVLSDGHLN 323

Query: 392 DDKLAALNQLRNIFGLAKYEAEAIITDVKARVFQTY 427
           DDKLAALNQLRNIFGLAKYEAEAIITDVKARVFQTY
Sbjct: 324 DDKLAALNQLRNIFGLAKYEAEAIITDVKARVFQTY 359



>Os10g0492000 Similar to Chloroplast inner envelope protein, 110 kD (IEP110)
           precursor
          Length = 153

 Score =  179 bits (453), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 89/142 (62%), Positives = 111/142 (78%), Gaps = 8/142 (5%)

Query: 191 LNDIDAANVHMEIAKRI--------DRNAGVGQQQAFEKLIFVTNLVFRDAYEYLLPWKR 242
           L+D+DAAN+HMEI +RI        DR+A + Q++AF+KLI+V+NLVF DA  +LLPWKR
Sbjct: 1   LDDVDAANMHMEIGRRIYRERLETRDRDADMEQRRAFQKLIYVSNLVFGDASTFLLPWKR 60

Query: 243 LFGVHESQIDDVMREXXXXXXXXXXXXIGRGLDIGTLIEVRRSQLAYKLSDEIASEMFRE 302
           LFGV +SQID  MRE            IGRGLDIGTLIEVRR+QLAYKLSDEIA+EMF+E
Sbjct: 61  LFGVTDSQIDIAMRENAKILYASQLKSIGRGLDIGTLIEVRRAQLAYKLSDEIAAEMFKE 120

Query: 303 HAKKLVEENISTALNNLNNRTQ 324
           HAKKLV+ENIS+AL+ + +RT+
Sbjct: 121 HAKKLVQENISSALDIVKSRTK 142



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.136    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,664,827
Number of extensions: 342226
Number of successful extensions: 887
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 886
Number of HSP's successfully gapped: 3
Length of query: 427
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 323
Effective length of database: 11,605,545
Effective search space: 3748591035
Effective search space used: 3748591035
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)