BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0492000 Os10g0492000|AK064354
(153 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0492000 Similar to Chloroplast inner envelope protein,... 311 2e-85
Os10g0492300 Conserved hypothetical protein 199 9e-52
AK120231 197 2e-51
>Os10g0492000 Similar to Chloroplast inner envelope protein, 110 kD (IEP110)
precursor
Length = 153
Score = 311 bits (796), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 153/153 (100%), Positives = 153/153 (100%)
Query: 1 LDDVDAANMHMEIGRRIYRERLETRDRDADMEQRRAFQKLIYVSNLVFGDASTFLLPWKR 60
LDDVDAANMHMEIGRRIYRERLETRDRDADMEQRRAFQKLIYVSNLVFGDASTFLLPWKR
Sbjct: 1 LDDVDAANMHMEIGRRIYRERLETRDRDADMEQRRAFQKLIYVSNLVFGDASTFLLPWKR 60
Query: 61 LFGVTDSQIDIAMRENAKILYASQLKSIGRGLDIGTLIEVRRAQLAYKLSDEIAAEMFKE 120
LFGVTDSQIDIAMRENAKILYASQLKSIGRGLDIGTLIEVRRAQLAYKLSDEIAAEMFKE
Sbjct: 61 LFGVTDSQIDIAMRENAKILYASQLKSIGRGLDIGTLIEVRRAQLAYKLSDEIAAEMFKE 120
Query: 121 HAKKLVQENISSALDIVKSRTKAANTQHRLLKM 153
HAKKLVQENISSALDIVKSRTKAANTQHRLLKM
Sbjct: 121 HAKKLVQENISSALDIVKSRTKAANTQHRLLKM 153
>Os10g0492300 Conserved hypothetical protein
Length = 427
Score = 199 bits (505), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 98/142 (69%), Positives = 121/142 (85%), Gaps = 8/142 (5%)
Query: 1 LDDVDAANMHMEIGRRIYRERLETRDRDADMEQRRAFQKLIYVSNLVFGDASTFLLPWKR 60
L+D+DAAN+HMEI +RI DR+A + Q++AF+KLI+V+NLVF DA +LLPWKR
Sbjct: 191 LNDIDAANVHMEIAKRI--------DRNAGVGQQQAFEKLIFVTNLVFRDAYEYLLPWKR 242
Query: 61 LFGVTDSQIDIAMRENAKILYASQLKSIGRGLDIGTLIEVRRAQLAYKLSDEIAAEMFKE 120
LFGV +SQID MRE+AK LYAS LKSIGRGLDIGTLIEVRR+QLAYKLSDEIA+EMF+E
Sbjct: 243 LFGVHESQIDDVMRESAKSLYASLLKSIGRGLDIGTLIEVRRSQLAYKLSDEIASEMFRE 302
Query: 121 HAKKLVQENISSALDIVKSRTK 142
HAKKLV+ENIS+AL+ + +RT+
Sbjct: 303 HAKKLVEENISTALNNLNNRTQ 324
>AK120231
Length = 359
Score = 197 bits (501), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 98/142 (69%), Positives = 121/142 (85%), Gaps = 8/142 (5%)
Query: 1 LDDVDAANMHMEIGRRIYRERLETRDRDADMEQRRAFQKLIYVSNLVFGDASTFLLPWKR 60
L+D+DAAN+HMEI +RI DR+A + Q++AF+KLI+V+NLVF DA +LLPWKR
Sbjct: 123 LNDIDAANVHMEIAKRI--------DRNAGVGQQQAFEKLIFVTNLVFRDAYEYLLPWKR 174
Query: 61 LFGVTDSQIDIAMRENAKILYASQLKSIGRGLDIGTLIEVRRAQLAYKLSDEIAAEMFKE 120
LFGV +SQID MRE+AK LYAS LKSIGRGLDIGTLIEVRR+QLAYKLSDEIA+EMF+E
Sbjct: 175 LFGVHESQIDDVMRESAKSLYASLLKSIGRGLDIGTLIEVRRSQLAYKLSDEIASEMFRE 234
Query: 121 HAKKLVQENISSALDIVKSRTK 142
HAKKLV+ENIS+AL+ + +RT+
Sbjct: 235 HAKKLVEENISTALNNLNNRTQ 256
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.134 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,931,812
Number of extensions: 132092
Number of successful extensions: 409
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 407
Number of HSP's successfully gapped: 3
Length of query: 153
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 61
Effective length of database: 12,232,113
Effective search space: 746158893
Effective search space used: 746158893
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 151 (62.8 bits)