BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0488300 Os10g0488300|AK100635
         (690 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0488300  Vps52/Sac2 family protein                          1378   0.0  
Os03g0417900  Similar to ARE1-like protein                        801   0.0  

>Os10g0488300 Vps52/Sac2 family protein
          Length = 690

 Score = 1378 bits (3567), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 674/690 (97%), Positives = 674/690 (97%)

Query: 1   MVVVHGQRXXXXXXXXXXXXXXXXSEDMSLDGLDEELEEHKDYDVLISILANGEKQRDMA 60
           MVVVHGQR                SEDMSLDGLDEELEEHKDYDVLISILANGEKQRDMA
Sbjct: 1   MVVVHGQRAEDSFGGFFSFDEDAASEDMSLDGLDEELEEHKDYDVLISILANGEKQRDMA 60

Query: 61  TLVEGNLGHAEQDLIQDYVEDSDNLVLLHDQIHDCDIILSQIGSLLTGFQVHIGSINSEL 120
           TLVEGNLGHAEQDLIQDYVEDSDNLVLLHDQIHDCDIILSQIGSLLTGFQVHIGSINSEL
Sbjct: 61  TLVEGNLGHAEQDLIQDYVEDSDNLVLLHDQIHDCDIILSQIGSLLTGFQVHIGSINSEL 120

Query: 121 RSLQERSLDISVRLKNRKLVETKLAKFVEEIVAPPSLVTVIIDGEINDGYAKSLEILSKK 180
           RSLQERSLDISVRLKNRKLVETKLAKFVEEIVAPPSLVTVIIDGEINDGYAKSLEILSKK
Sbjct: 121 RSLQERSLDISVRLKNRKLVETKLAKFVEEIVAPPSLVTVIIDGEINDGYAKSLEILSKK 180

Query: 181 LRFSQVDPMINASNSLKDIKPELERLLQKALCKVSDYLTELFFSMRKPGTNIQILQQNMV 240
           LRFSQVDPMINASNSLKDIKPELERLLQKALCKVSDYLTELFFSMRKPGTNIQILQQNMV
Sbjct: 181 LRFSQVDPMINASNSLKDIKPELERLLQKALCKVSDYLTELFFSMRKPGTNIQILQQNMV 240

Query: 241 QKYRYLILFLREHGSKVYTDVRATYADTMNKVLSAHFQVYIEALEKLKLDIGVSSDLTGY 300
           QKYRYLILFLREHGSKVYTDVRATYADTMNKVLSAHFQVYIEALEKLKLDIGVSSDLTGY
Sbjct: 241 QKYRYLILFLREHGSKVYTDVRATYADTMNKVLSAHFQVYIEALEKLKLDIGVSSDLTGY 300

Query: 301 DTNIIDLISRGREHLRNHRFMFSLGERASILKEIDRPGLVPHISEVNPVKYPYEVIFRSI 360
           DTNIIDLISRGREHLRNHRFMFSLGERASILKEIDRPGLVPHISEVNPVKYPYEVIFRSI
Sbjct: 301 DTNIIDLISRGREHLRNHRFMFSLGERASILKEIDRPGLVPHISEVNPVKYPYEVIFRSI 360

Query: 361 QKLLMDTASSEYLFIKAFFGEESLFYQVFQGPFKVINGHLDHTLRNYHDAVCLMLMICIT 420
           QKLLMDTASSEYLFIKAFFGEESLFYQVFQGPFKVINGHLDHTLRNYHDAVCLMLMICIT
Sbjct: 361 QKLLMDTASSEYLFIKAFFGEESLFYQVFQGPFKVINGHLDHTLRNYHDAVCLMLMICIT 420

Query: 421 RKHQLVMLNRRLPCLDAYLDKVLIYLWPRFKTVFDMYLQSLYRCDTKLLWVDGSHPHHIV 480
           RKHQLVMLNRRLPCLDAYLDKVLIYLWPRFKTVFDMYLQSLYRCDTKLLWVDGSHPHHIV
Sbjct: 421 RKHQLVMLNRRLPCLDAYLDKVLIYLWPRFKTVFDMYLQSLYRCDTKLLWVDGSHPHHIV 480

Query: 481 RCYVEFTASLIQLNAECGDGQLDMNLERLRLAVDNLLGRLAENFANPKTQHLFLLNNYDM 540
           RCYVEFTASLIQLNAECGDGQLDMNLERLRLAVDNLLGRLAENFANPKTQHLFLLNNYDM
Sbjct: 481 RCYVEFTASLIQLNAECGDGQLDMNLERLRLAVDNLLGRLAENFANPKTQHLFLLNNYDM 540

Query: 541 TISVLKEAGDEANKLQSYFEEKLESNMISFADELLMEHFKDLIKFVRSRVSEDLILYTEC 600
           TISVLKEAGDEANKLQSYFEEKLESNMISFADELLMEHFKDLIKFVRSRVSEDLILYTEC
Sbjct: 541 TISVLKEAGDEANKLQSYFEEKLESNMISFADELLMEHFKDLIKFVRSRVSEDLILYTEC 600

Query: 601 PSIADVEPIVKNFAVTWKTALELMHNEVVTSCSNLLAGMEILKAAMVQLLNDYNRLSECV 660
           PSIADVEPIVKNFAVTWKTALELMHNEVVTSCSNLLAGMEILKAAMVQLLNDYNRLSECV
Sbjct: 601 PSIADVEPIVKNFAVTWKTALELMHNEVVTSCSNLLAGMEILKAAMVQLLNDYNRLSECV 660

Query: 661 KIIPGGSTLNRNLVSITSISYEMRKYSITL 690
           KIIPGGSTLNRNLVSITSISYEMRKYSITL
Sbjct: 661 KIIPGGSTLNRNLVSITSISYEMRKYSITL 690



>Os03g0417900 Similar to ARE1-like protein
          Length = 702

 Score =  801 bits (2068), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/666 (57%), Positives = 513/666 (77%), Gaps = 1/666 (0%)

Query: 26  EDMSLDGLDEELEEHKDYDVLISILANGEKQRDMATLVEGNLGHAEQDLIQDYVEDSDNL 85
           ED SL+GL +EL++ KD + + +ILANG K RD    VE N+   E D IQDY+ +S+NL
Sbjct: 37  EDESLEGLRQELDDCKDDEEVANILANGIKLRDYTKGVENNIRQIELDSIQDYIGESENL 96

Query: 86  VLLHDQIHDCDIILSQIGSLLTGFQVHIGSINSELRSLQERSLDISVRLKNRKLVETKLA 145
           V LHDQI DCD ILSQ+ ++LTGFQ  IGSI+SE++ LQE+S+D+ ++LKNRK  E+KL+
Sbjct: 97  VSLHDQIRDCDNILSQMETVLTGFQTEIGSISSEIKVLQEKSMDMGLKLKNRKAAESKLS 156

Query: 146 KFVEEIVAPPSLVTVIIDGEINDGYAKSLEILSKKLRFSQVDPMINASNSLKDIKPELER 205
           KFVE+I+ PP ++ +I+DGE+ND Y K+LE LS+K++F +VD M+ +S +LKD++PE+ER
Sbjct: 157 KFVEDIIVPPRMIDIIVDGEVNDEYMKTLETLSRKIKFIEVDAMVKSSKALKDVQPEVER 216

Query: 206 LLQKALCKVSDYLTELFFSMRKPGTNIQILQQNMVQKYRYLILFLREHGSKVYTDVRATY 265
           L QKA+ K+ +++ + F+++RKP TNIQILQQ+++ KY+Y I+FL+EH  ++Y +VRA Y
Sbjct: 217 LRQKAVSKIFEFVIQKFYALRKPKTNIQILQQSVLLKYKYTIVFLKEHAKEIYAEVRAAY 276

Query: 266 ADTMNKVLSAHFQVYIEALEKLKLDIGVSSDLTGYDTNIID-LISRGREHLRNHRFMFSL 324
            DTMNKVLSAHF+ YI+ALEKL+LDI  S+DL G +T     L S G+E L+    +F+L
Sbjct: 277 IDTMNKVLSAHFRAYIQALEKLQLDIATSTDLLGVETRSTGFLFSMGKESLKTRSSVFAL 336

Query: 325 GERASILKEIDRPGLVPHISEVNPVKYPYEVIFRSIQKLLMDTASSEYLFIKAFFGEESL 384
           GER +ILKEID+P L+PHI+E    KYPYEV+FRS+QKLL+DTA+SEYLF   FFGEESL
Sbjct: 337 GERINILKEIDQPALIPHIAEAKSQKYPYEVLFRSLQKLLIDTATSEYLFSDDFFGEESL 396

Query: 385 FYQVFQGPFKVINGHLDHTLRNYHDAVCLMLMICITRKHQLVMLNRRLPCLDAYLDKVLI 444
           F  +F GP +V++ H +  L N +DA+ +MLMI I  +HQL+M  RR+PCLD+YLDKV +
Sbjct: 397 FNDIFAGPIQVVDEHFNAVLLNCYDAIGIMLMIRIIHQHQLIMFKRRIPCLDSYLDKVNL 456

Query: 445 YLWPRFKTVFDMYLQSLYRCDTKLLWVDGSHPHHIVRCYVEFTASLIQLNAECGDGQLDM 504
            LWPRFK VFD++L SL   + K LW D  HPH+++R Y EFTASL+ LN E GDGQLD+
Sbjct: 457 SLWPRFKMVFDLHLNSLRNANVKTLWEDDVHPHYVMRRYAEFTASLVHLNVEYGDGQLDL 516

Query: 505 NLERLRLAVDNLLGRLAENFANPKTQHLFLLNNYDMTISVLKEAGDEANKLQSYFEEKLE 564
           NLERLR+AV+ LL +LA+ F   K Q +FL+NNYD+TIS+LKEAG E  K Q +FEE L+
Sbjct: 517 NLERLRMAVEELLVKLAKMFPKQKLQTVFLINNYDLTISILKEAGTEGGKAQVHFEEVLK 576

Query: 565 SNMISFADELLMEHFKDLIKFVRSRVSEDLILYTECPSIADVEPIVKNFAVTWKTALELM 624
           SN+  + +ELL+EHF DLIKFV+SR SED    ++  S++DVEP+VK+FA  WK A+ELM
Sbjct: 577 SNISVYVEELLLEHFSDLIKFVKSRPSEDTASSSDKASVSDVEPLVKDFAGRWKAAIELM 636

Query: 625 HNEVVTSCSNLLAGMEILKAAMVQLLNDYNRLSECVKIIPGGSTLNRNLVSITSISYEMR 684
           H +V+TS SN L GMEILKAA+ QLL  Y R++ECVK I GGS LN++LVSI+SI YE++
Sbjct: 637 HKDVITSFSNFLCGMEILKAALTQLLLYYTRITECVKKINGGSALNKDLVSISSILYEIK 696

Query: 685 KYSITL 690
           KYS T 
Sbjct: 697 KYSRTF 702



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.138    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 20,098,081
Number of extensions: 776503
Number of successful extensions: 1964
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1962
Number of HSP's successfully gapped: 2
Length of query: 690
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 582
Effective length of database: 11,396,689
Effective search space: 6632872998
Effective search space used: 6632872998
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 159 (65.9 bits)