Os10g0488300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Vps52/Sac2 family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os10g0488300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Vps52/Sac2 family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 128.52 | 0.533 | 2.86 | 0.115 | 0.149 | -0.471 | -0.741 | 1.11 | 0.286 | 18.4 | 20.02 | 718 | -- | -- |
| 129.53 | 0.53 | 2.88 | 0.0206 | 0.183 | -0.476 | -0.176 | -- | 0.233 | 17.6 | 20.07 | 657 | -- | -- |
| 129.12 | 0.529 | 2.87 | 0.086 | 0.199 | -0.514 | -- | 0.464 | 0.274 | 17.5 | 20 | 685 | -- | -- |
| 129.29 | 0.53 | 2.88 | 0.0572 | 0.193 | -0.489 | -- | -- | 0.252 | 16.4 | 20.02 | 640 | -- | -- |
| 129.94 | 0.531 | 2.87 | 0.0664 | -- | -0.352 | -- | 0.579 | 0.245 | -- | 20.02 | 659 | -- | -- |
| 132.41 | 0.539 | 2.89 | -0.0273 | 0.148 | -- | 0.423 | -- | 0.183 | 7.51 | -- | -- | -- | -- |
| 132.89 | 0.54 | 2.89 | -0.0178 | 0.15 | -- | -- | -- | 0.182 | 7.24 | -- | -- | -- | -- |
| 130.22 | 0.531 | 2.88 | 0.0283 | -- | -0.317 | -- | -- | 0.229 | -- | 20.12 | 695 | -- | -- |
| 129.37 | 0.53 | 2.88 | -- | 0.195 | -0.49 | -- | -- | 0.249 | 16.4 | 20.01 | 640 | -- | -- |
| 134.08 | 0.541 | 2.89 | -0.0151 | -- | -- | -- | -- | 0.185 | -- | -- | -- | -- | -- |
| 132.9 | 0.539 | 2.89 | -- | 0.15 | -- | -- | -- | 0.184 | 7.25 | -- | -- | -- | -- |
| 130.24 | 0.532 | 2.88 | -- | -- | -0.314 | -- | -- | 0.225 | -- | 20.09 | 695 | -- | -- |
| 134.09 | 0.54 | 2.89 | -- | -- | -- | -- | -- | 0.186 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 120.01 | radiation | 1.0 | 90 | < th | dose independent | rect. | 14 | 1 |
| 2 | 120.01 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 80 | 126.48 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 10 | 3 |
| 101 | 126.65 | humidity | 90.0 | 270 | > th | dose independent | rect. | 11 | 2 |
| 113 | 126.75 | temperature | 25.0 | 90 | < th | dose independent | rect. | 14 | 9 |
| 121 | 126.86 | wind | 7.0 | 90 | > th | dose independent | rect. | 14 | 1 |
| 125 | 126.91 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 10 | 1 |
| 142 | 127.09 | wind | 7.0 | 90 | > th | dose dependent | rect. | 14 | 1 |
| 157 | 127.17 | wind | 7.0 | 90 | > th | dose dependent | rect. | 14 | 11 |
| 204 | 127.32 | wind | 7.0 | 90 | > th | dose independent | rect. | 14 | 11 |
| 215 | 127.36 | temperature | 25.0 | 270 | < th | dose independent | rect. | 11 | 10 |
| 255 | 127.48 | wind | 7.0 | 90 | > th | dose dependent | rect. | 14 | 3 |
| 271 | 127.55 | humidity | 80.0 | 90 | > th | dose independent | rect. | 15 | 1 |
| 322 | 127.72 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 15 | 1 |
| 327 | 127.77 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 8 | 1 |
| 331 | 127.77 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 8 | 1 |
| 344 | 127.79 | radiation | 40.0 | 720 | < th | dose dependent | rect. | 10 | 6 |
| 366 | 127.84 | temperature | 25.0 | 90 | < th | dose independent | rect. | 14 | 3 |
| 404 | 127.93 | wind | 1.0 | 90 | < th | dose dependent | rect. | 11 | 1 |
| 418 | 127.97 | temperature | 25.0 | 720 | < th | dose independent | rect. | 10 | 3 |
| 425 | 128.00 | temperature | 25.0 | 720 | < th | dose independent | rect. | 10 | 5 |
| 430 | 128.02 | temperature | 25.0 | 90 | < th | dose independent | rect. | 14 | 1 |
| 436 | 128.04 | temperature | 25.0 | 720 | < th | dose independent | rect. | 11 | 1 |
| 449 | 128.07 | wind | 7.0 | 90 | > th | dose dependent | sin | 14 | NA |
| 451 | 128.08 | temperature | 25.0 | 720 | > th | dose independent | rect. | 9 | 6 |
| 471 | 128.12 | wind | 7.0 | 90 | > th | dose independent | rect. | 14 | 3 |
| 480 | 128.14 | wind | 1.0 | 90 | < th | dose independent | rect. | 11 | 1 |
| 488 | 128.16 | radiation | 10.0 | 720 | > th | dose independent | rect. | 7 | 9 |
| 493 | 128.17 | radiation | 20.0 | 720 | > th | dose independent | rect. | 9 | 6 |
| 545 | 128.25 | wind | 5.0 | 10 | > th | dose independent | rect. | 21 | 1 |
| 597 | 128.34 | wind | 7.0 | 90 | > th | dose independent | sin | 14 | NA |
| 618 | 128.35 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 19 | 3 |
| 621 | 128.36 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 20 | 1 |
| 623 | 128.37 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 626 | 128.37 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 632 | 128.39 | radiation | 20.0 | 720 | > th | dose independent | sin | 22 | NA |
| 639 | 128.39 | radiation | 20.0 | 720 | > th | dose independent | rect. | 9 | 23 |
| 642 | 128.39 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 8 | 11 |
| 652 | 128.41 | radiation | 40.0 | 720 | < th | dose dependent | rect. | 10 | 12 |
| 699 | 128.46 | radiation | 20.0 | 720 | < th | dose independent | rect. | 10 | 5 |
| 713 | 128.46 | radiation | 20.0 | 720 | > th | dose independent | rect. | 12 | 23 |
| 721 | 128.47 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 8 | 7 |
| 777 | 128.52 | radiation | 20.0 | 720 | > th | dose independent | no | NA | NA |
| 904 | 128.53 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 933 | 128.57 | temperature | 25.0 | 90 | < th | dose independent | sin | 19 | NA |
| 935 | 128.57 | radiation | 10.0 | 720 | > th | dose independent | rect. | 13 | 2 |
| 954 | 128.58 | humidity | 70.0 | 720 | > th | dose independent | rect. | 20 | 19 |
| 966 | 128.59 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 12 | 1 |