BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0486600 Os10g0486600|AK063786
(142 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0486600 Similar to Thioredoxin-like protein 4A (Thiore... 298 1e-81
Os07g0202450 Similar to Mitosis protein dim1 298 1e-81
Os11g0297900 Similar to Txnl4b protein 87 3e-18
>Os10g0486600 Similar to Thioredoxin-like protein 4A (Thioredoxin-like U5 snRNP
protein U5- 15kD) (Spliceosomal U5 snRNP-specific 15 kDa
protein) (DIM1 protein homolog)
Length = 142
Score = 298 bits (762), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 142/142 (100%), Positives = 142/142 (100%)
Query: 1 MSYLLPHLHSGWAVDQAILAEEERLVIIRFGHDWDETCMQMDEVLAAVAETIKNFAVIYL 60
MSYLLPHLHSGWAVDQAILAEEERLVIIRFGHDWDETCMQMDEVLAAVAETIKNFAVIYL
Sbjct: 1 MSYLLPHLHSGWAVDQAILAEEERLVIIRFGHDWDETCMQMDEVLAAVAETIKNFAVIYL 60
Query: 61 VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120
VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY
Sbjct: 61 VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120
Query: 121 RGARKGRGLVIAPKDYSTKYRY 142
RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142
>Os07g0202450 Similar to Mitosis protein dim1
Length = 142
Score = 298 bits (762), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 142/142 (100%), Positives = 142/142 (100%)
Query: 1 MSYLLPHLHSGWAVDQAILAEEERLVIIRFGHDWDETCMQMDEVLAAVAETIKNFAVIYL 60
MSYLLPHLHSGWAVDQAILAEEERLVIIRFGHDWDETCMQMDEVLAAVAETIKNFAVIYL
Sbjct: 1 MSYLLPHLHSGWAVDQAILAEEERLVIIRFGHDWDETCMQMDEVLAAVAETIKNFAVIYL 60
Query: 61 VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120
VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY
Sbjct: 61 VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120
Query: 121 RGARKGRGLVIAPKDYSTKYRY 142
RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142
>Os11g0297900 Similar to Txnl4b protein
Length = 152
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 79/136 (58%), Gaps = 6/136 (4%)
Query: 2 SYLLPHLHSGWAVDQAILAEEERLVIIRFGHDWDETCMQMDEVLAAVAETIKNFAVIYLV 61
S LLP L VD AI ++++++RFG D C+ +D++LA + I FA + LV
Sbjct: 3 SALLPTLRRKPEVDAAIRDTLDKVLVLRFGRADDAACLHLDDILAKSSWDISRFATVALV 62
Query: 62 DITEVPDFNTMYELYD----PSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVE 117
D+ + + + +D P+T+ FFF +H+ +D GT ++ K + KQ+FID+VE
Sbjct: 63 DM-DSEEMQVYIDYFDITLVPATI-FFFNAQHMKMDSGTPDHTKWIGSFSSKQDFIDVVE 120
Query: 118 TVYRGARKGRGLVIAP 133
++RGA KG+ +V P
Sbjct: 121 AIFRGAMKGKLIVSCP 136
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.139 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,801,619
Number of extensions: 179839
Number of successful extensions: 288
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 287
Number of HSP's successfully gapped: 3
Length of query: 142
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 51
Effective length of database: 12,284,327
Effective search space: 626500677
Effective search space used: 626500677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 151 (62.8 bits)