Os10g0486600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Thioredoxin-like protein 4A (Thioredoxin-like U5 snRNP protein U5- 15kD) (Spliceosomal U5 snRNP-specific 15 kDa protein) (DIM1 protein homolog).
FiT-DB / Search/ Help/ Sample detail
|
Os10g0486600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Thioredoxin-like protein 4A (Thioredoxin-like U5 snRNP protein U5- 15kD) (Spliceosomal U5 snRNP-specific 15 kDa protein) (DIM1 protein homolog).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.21 | 0.309 | 11.7 | -0.619 | 0.743 | -0.564 | 0.174 | -0.953 | -0.133 | 11.8 | 28.86 | 4817 | -- | -- |
| 43.38 | 0.307 | 11.7 | -0.864 | 0.746 | -0.705 | 0.0834 | -- | -0.183 | 11.6 | 28.3 | 4797 | -- | -- |
| 43.25 | 0.306 | 11.7 | -0.63 | 0.744 | -0.571 | -- | -0.877 | -0.152 | 11.6 | 28.5 | 4810 | -- | -- |
| 43.05 | 0.306 | 11.7 | -0.89 | 0.712 | -0.68 | -- | -- | -0.209 | 11.8 | 27.88 | 4709 | -- | -- |
| 68.44 | 0.387 | 11.7 | -0.83 | -- | -0.539 | -- | 0.17 | -0.181 | -- | 27.8 | 5995 | -- | -- |
| 59.04 | 0.36 | 11.7 | -0.655 | 0.708 | -- | 0.0943 | -- | -0.147 | 12 | -- | -- | -- | -- |
| 59.07 | 0.36 | 11.7 | -0.651 | 0.707 | -- | -- | -- | -0.147 | 12 | -- | -- | -- | -- |
| 66.1 | 0.38 | 11.7 | -0.81 | -- | -0.559 | -- | -- | -0.207 | -- | 27.71 | 4656 | -- | -- |
| 61.34 | 0.365 | 11.7 | -- | 0.738 | -0.481 | -- | -- | -0.084 | 11.9 | 28.8 | 4782 | -- | -- |
| 90.58 | 0.445 | 11.7 | -0.673 | -- | -- | -- | -- | -0.157 | -- | -- | -- | -- | -- |
| 70.25 | 0.392 | 11.7 | -- | 0.716 | -- | -- | -- | -0.0744 | 12 | -- | -- | -- | -- |
| 83.06 | 0.426 | 11.7 | -- | -- | -0.494 | -- | -- | -0.113 | -- | 27.71 | 4656 | -- | -- |
| 102.52 | 0.473 | 11.7 | -- | -- | -- | -- | -- | -0.082 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.02 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 2 | 43.07 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 7 | 43.33 | radiation | 30.0 | 4320 | > th | dose independent | rect. | 15 | 19 |
| 12 | 43.55 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 15 | 19 |
| 13 | 43.58 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 7 | 4 |
| 17 | 43.70 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 18 | 43.71 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 20 |
| 19 | 43.71 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 2 | 9 |
| 25 | 43.75 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 14 | 20 |
| 35 | 43.80 | radiation | 30.0 | 4320 | > th | dose dependent | rect. | 15 | 19 |
| 108 | 44.02 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 4 | 6 |
| 119 | 44.03 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 18 | 16 |
| 122 | 44.04 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 20 | 14 |
| 130 | 44.05 | radiation | 30.0 | 4320 | > th | dose dependent | rect. | 7 | 3 |
| 157 | 44.11 | temperature | 25.0 | 4320 | > th | dose dependent | sin | 5 | NA |
| 169 | 44.15 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 170 | 44.15 | radiation | 30.0 | 4320 | > th | dose independent | rect. | 7 | 3 |
| 256 | 44.30 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 8 | 9 |
| 309 | 44.33 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 320 | 44.34 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 3 | 14 |
| 324 | 44.34 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 327 | 44.35 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 8 | 9 |
| 328 | 44.35 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 4 | 10 |
| 344 | 44.36 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 8 | 6 |
| 345 | 44.36 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 6 | 8 |
| 348 | 44.36 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 22 | 16 |
| 356 | 44.37 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 15 | 5 |
| 383 | 44.39 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 439 | 44.45 | radiation | 30.0 | 4320 | > th | dose independent | sin | 12 | NA |
| 462 | 44.47 | temperature | 30.0 | 14400 | > th | dose independent | sin | 17 | NA |
| 512 | 44.49 | temperature | 30.0 | 14400 | > th | dose independent | no | NA | NA |
| 513 | 44.49 | temperature | 30.0 | 14400 | < th | dose independent | sin | 16 | NA |
| 630 | 44.51 | radiation | 30.0 | 4320 | < th | dose independent | sin | 11 | NA |
| 666 | 44.53 | temperature | 30.0 | 14400 | < th | dose independent | no | NA | NA |
| 872 | 44.59 | temperature | 30.0 | 4320 | < th | dose independent | sin | 7 | NA |