BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0486600 Os10g0486600|AK063786
         (142 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G08290.1  | chr5:2666043-2666936 FORWARD LENGTH=143            295   6e-81
AT3G24730.1  | chr3:9030152-9030894 REVERSE LENGTH=160             94   2e-20

>AT5G08290.1 | chr5:2666043-2666936 FORWARD LENGTH=143
          Length = 142

 Score =  295 bits (755), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 138/142 (97%), Positives = 142/142 (100%)

Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVIIRFGHDWDETCMQMDEVLAAVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQ+ILAEEERLV+IRFGHDWDETCMQMDEVLA+VAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDI+ETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 142
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142



>AT3G24730.1 | chr3:9030152-9030894 REVERSE LENGTH=160
          Length = 159

 Score = 94.4 bits (233), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 78/137 (56%), Gaps = 6/137 (4%)

Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVIIRFGHDWDETCMQMDEVLAAVAETIKNFAVIYL 60
           MSYLL  L +   +D+ I    + ++++RFG   D  C+Q DE+LA     +  FA + L
Sbjct: 9   MSYLLKTLTTKEEIDRVIRDTIDEVLVLRFGRSSDAVCLQHDEILAKSVRDVSKFAKVAL 68

Query: 61  VDITEVPDFNTMYELYD----PSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIV 116
           VD+ +  D     + +D    PST+ FFF   H+ +D GT ++ K   A   KQ+FID+V
Sbjct: 69  VDV-DSEDVQVYVKYFDITLFPSTI-FFFNAHHMKLDSGTADHTKWVGAFHIKQDFIDVV 126

Query: 117 ETVYRGARKGRGLVIAP 133
           E +YRGA KG+ +V  P
Sbjct: 127 EAIYRGAMKGKMIVQCP 143



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.139    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,227,832
Number of extensions: 127470
Number of successful extensions: 244
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 243
Number of HSP's successfully gapped: 2
Length of query: 142
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 53
Effective length of database: 8,666,545
Effective search space: 459326885
Effective search space used: 459326885
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 106 (45.4 bits)