Os11g0297900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Txnl4b protein.
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Os11g0297900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Txnl4b protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.3 | 0.263 | 10.1 | -0.811 | 0.195 | 0.896 | 0.596 | -1.1 | -0.278 | 16 | 21.39 | 83 | -- | -- |
| 31.69 | 0.264 | 10.1 | -0.609 | 0.245 | 0.864 | 0.244 | -- | -0.223 | 17.5 | 21.39 | 83 | -- | -- |
| 31.72 | 0.264 | 10.1 | -0.669 | 0.238 | 0.911 | -- | -0.329 | -0.243 | 17.9 | 21.48 | 57 | -- | -- |
| 31.81 | 0.264 | 10.1 | -0.614 | 0.24 | 0.887 | -- | -- | -0.226 | 17.8 | 21.48 | 57 | -- | -- |
| 33.41 | 0.269 | 10.1 | -0.743 | -- | 1.04 | -- | -0.586 | -0.282 | -- | 21.64 | 77 | -- | -- |
| 43.28 | 0.308 | 10.1 | -0.442 | 0.524 | -- | 0.548 | -- | -0.082 | 15.8 | -- | -- | -- | -- |
| 44.17 | 0.311 | 10.1 | -0.434 | 0.527 | -- | -- | -- | -0.0788 | 15.8 | -- | -- | -- | -- |
| 33.76 | 0.271 | 10.1 | -0.658 | -- | 1.01 | -- | -- | -0.253 | -- | 21.68 | 79 | -- | -- |
| 41.09 | 0.3 | 10.1 | -- | 0.302 | 0.69 | -- | -- | -0.127 | 16.9 | 21.9 | 35 | -- | -- |
| 59.48 | 0.36 | 10.1 | -0.456 | -- | -- | -- | -- | -0.0929 | -- | -- | -- | -- | -- |
| 49.14 | 0.328 | 10.1 | -- | 0.536 | -- | -- | -- | -0.0305 | 15.8 | -- | -- | -- | -- |
| 44.04 | 0.309 | 10.1 | -- | -- | 0.885 | -- | -- | -0.126 | -- | 24 | 64 | -- | -- |
| 64.97 | 0.376 | 10.1 | -- | -- | -- | -- | -- | -0.0423 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.37 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 22 |
| 3 | 30.55 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 22 |
| 8 | 30.72 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 10 | 30.88 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 21 |
| 20 | 31.22 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 34 | 31.44 | temperature | 10 | 10 | > th | dose dependent | sin | 22 | NA |
| 38 | 31.45 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 66 | 31.69 | temperature | 30 | 10 | < th | dose dependent | sin | 22 | NA |
| 69 | 31.71 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 79 | 31.75 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 83 | 31.76 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 101 | 31.84 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 207 | 32.41 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 214 | 32.43 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 222 | 32.45 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 227 | 32.48 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 228 | 32.49 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 16 |
| 240 | 32.54 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 251 | 32.59 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 253 | 32.59 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 267 | 32.63 | temperature | 20 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 270 | 32.64 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 288 | 32.70 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 294 | 32.74 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 312 | 32.80 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 323 | 32.84 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 20 |
| 336 | 32.88 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 16 |
| 369 | 32.95 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 380 | 32.99 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 404 | 33.04 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 19 |
| 473 | 33.23 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 534 | 33.35 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 550 | 33.39 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 569 | 33.43 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 13 |
| 598 | 33.47 | temperature | 20 | 30 | > th | dose dependent | rect. | 6 | 12 |
| 602 | 33.47 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 19 |
| 628 | 33.51 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 645 | 33.54 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 654 | 33.55 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 9 |
| 676 | 33.57 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 7 |
| 700 | 33.58 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 21 |
| 705 | 33.59 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 729 | 33.60 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 18 |
| 833 | 33.70 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 889 | 33.75 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 895 | 33.75 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 905 | 33.76 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 920 | 33.77 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 974 | 33.81 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 5 |