BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0297900 Os11g0297900|AK067692
         (152 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G24730.1  | chr3:9030152-9030894 REVERSE LENGTH=160            235   7e-63
AT5G08290.1  | chr5:2666043-2666936 FORWARD LENGTH=143             87   5e-18

>AT3G24730.1 | chr3:9030152-9030894 REVERSE LENGTH=160
          Length = 159

 Score =  235 bits (599), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 108/150 (72%), Positives = 129/150 (86%)

Query: 3   SALLPTLRRKPEVDAAIRDTLDKVLVLRFGRADDAACLHLDDILAKSSWDISRFATVALV 62
           S LL TL  K E+D  IRDT+D+VLVLRFGR+ DA CL  D+ILAKS  D+S+FA VALV
Sbjct: 10  SYLLKTLTTKEEIDRVIRDTIDEVLVLRFGRSSDAVCLQHDEILAKSVRDVSKFAKVALV 69

Query: 63  DMDSEEMQVYIDYFDITLVPATIFFFNAQHMKMDSGTPDHTKWIGSFSSKQDFIDVVEAI 122
           D+DSE++QVY+ YFDITL P+TIFFFNA HMK+DSGT DHTKW+G+F  KQDFIDVVEAI
Sbjct: 70  DVDSEDVQVYVKYFDITLFPSTIFFFNAHHMKLDSGTADHTKWVGAFHIKQDFIDVVEAI 129

Query: 123 FRGAMKGKLIVSCPLPPERIPKFQLLFKDV 152
           +RGAMKGK+IV CP+PPERIPK+QL++KDV
Sbjct: 130 YRGAMKGKMIVQCPIPPERIPKYQLVYKDV 159



>AT5G08290.1 | chr5:2666043-2666936 FORWARD LENGTH=143
          Length = 142

 Score = 86.7 bits (213), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 79/136 (58%), Gaps = 6/136 (4%)

Query: 3   SALLPTLRRKPEVDAAIRDTLDKVLVLRFGRADDAACLHLDDILAKSSWDISRFATVALV 62
           S LLP L     VD +I    ++++V+RFG   D  C+ +D++LA  +  I  FA + LV
Sbjct: 2   SYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLV 61

Query: 63  DM-DSEEMQVYIDYFDITLVPATI-FFFNAQHMKMDSGTPDHTKWIGSFSSKQDFIDVVE 120
           D+ +  +     + +D    P+T+ FFF  +H+ +D GT ++ K   +   KQ+FID++E
Sbjct: 62  DITEVPDFNTMYELYD----PSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIE 117

Query: 121 AIFRGAMKGKLIVSCP 136
            ++RGA KG+ +V  P
Sbjct: 118 TVYRGARKGRGLVIAP 133



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.326    0.140    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,291,210
Number of extensions: 126261
Number of successful extensions: 341
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 340
Number of HSP's successfully gapped: 2
Length of query: 152
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 62
Effective length of database: 8,639,129
Effective search space: 535625998
Effective search space used: 535625998
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 107 (45.8 bits)