BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0483900 Os10g0483900|Os10g0483900
         (202 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0483900  Conserved hypothetical protein                      236   1e-62
Os03g0110300  Conserved hypothetical protein                       67   8e-12

>Os10g0483900 Conserved hypothetical protein
          Length = 202

 Score =  236 bits (601), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 125/173 (72%), Positives = 125/173 (72%)

Query: 30  CHTFFVSFAANPNPIVGDGEVGDHRGAALATATVITVFRVRRXXXXXXXXXXXXXXXXXX 89
           CHTFFVSFAANPNPIVGDGEVGDHRGAALATATVITVFRVRR                  
Sbjct: 30  CHTFFVSFAANPNPIVGDGEVGDHRGAALATATVITVFRVRRLGPHLAHVHGHGHAHPNL 89

Query: 90  XXXXSIPANVQIRRPELPEHPRPAAHAADSFQERAKDXXXXXXXXXXXXXXXALTAASMY 149
               SIPANVQIRRPELPEHPRPAAHAADSFQERAKD               ALTAASMY
Sbjct: 90  HHLHSIPANVQIRRPELPEHPRPAAHAADSFQERAKDILVVVVGILFGVGCGALTAASMY 149

Query: 150 LVWSVLAGDAAAAPSPYDELYGXXXXXXXXXXXPKKVGYVIIPGVEAHDGGMN 202
           LVWSVLAGDAAAAPSPYDELYG           PKKVGYVIIPGVEAHDGGMN
Sbjct: 150 LVWSVLAGDAAAAPSPYDELYGDEDEEASDSESPKKVGYVIIPGVEAHDGGMN 202



>Os03g0110300 Conserved hypothetical protein
          Length = 172

 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 50/106 (47%), Positives = 57/106 (53%), Gaps = 9/106 (8%)

Query: 99  VQIRRPELPEHPRPAAH-AADSFQERAKDXXXXXXXXXXXXXXXALTAASMYLVWSVLAG 157
           +QI RP+    P PAA  AA S QERAKD               ALTAA+MYLVWS+LA 
Sbjct: 74  LQIPRPD----PLPAASDAASSVQERAKDILVVVSGLLFGFGCGALTAATMYLVWSLLA- 128

Query: 158 DAAAAPSPYDELYG-XXXXXXXXXXXPKKVGYVIIPGVEAHDGGMN 202
            +  APS YDE+YG            PKK GYVII   E + GG N
Sbjct: 129 -STCAPS-YDEVYGEDDDDELSDSESPKKAGYVIIHDAEQYVGGKN 172



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,052,353
Number of extensions: 136674
Number of successful extensions: 386
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 384
Number of HSP's successfully gapped: 2
Length of query: 202
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 106
Effective length of database: 12,023,257
Effective search space: 1274465242
Effective search space used: 1274465242
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 153 (63.5 bits)