Os03g0110300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0110300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.17 | 0.316 | 12.2 | -0.374 | 0.487 | 0.43 | 0.000125 | 0.458 | -0.0756 | 6.92 | 21.2 | 962 | -- | -- |
| 45.68 | 0.315 | 12.2 | -0.481 | 0.495 | 0.408 | -0.0501 | -- | -0.105 | 6.97 | 21.2 | 914 | -- | -- |
| 45.17 | 0.313 | 12.2 | -0.374 | 0.489 | 0.429 | -- | 0.453 | -0.0759 | 6.93 | 21.24 | 948 | -- | -- |
| 45.69 | 0.315 | 12.2 | -0.482 | 0.495 | 0.395 | -- | -- | -0.0994 | 6.93 | 21.2 | 900 | -- | -- |
| 56.26 | 0.349 | 12.2 | -0.308 | -- | 0.431 | -- | 0.696 | -0.057 | -- | 21.43 | 1318 | -- | -- |
| 50.65 | 0.334 | 12.2 | -0.331 | 0.462 | -- | -0.108 | -- | 0.00696 | 6.46 | -- | -- | -- | -- |
| 50.68 | 0.333 | 12.2 | -0.332 | 0.461 | -- | -- | -- | 0.00729 | 6.46 | -- | -- | -- | -- |
| 57.27 | 0.352 | 12.2 | -0.482 | -- | 0.392 | -- | -- | -0.101 | -- | 21.3 | 1231 | -- | -- |
| 50.86 | 0.332 | 12.2 | -- | 0.474 | 0.252 | -- | -- | -0.0344 | 6.79 | 22 | 900 | -- | -- |
| 61.74 | 0.367 | 12.2 | -0.321 | -- | -- | -- | -- | 0.0169 | -- | -- | -- | -- | -- |
| 53.59 | 0.342 | 12.2 | -- | 0.457 | -- | -- | -- | 0.0443 | 6.5 | -- | -- | -- | -- |
| 62.13 | 0.367 | 12.2 | -- | -- | 0.222 | -- | -- | -0.015 | -- | 22.4 | 1214 | -- | -- |
| 64.45 | 0.375 | 12.2 | -- | -- | -- | -- | -- | 0.0525 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.15 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 3 |
| 4 | 43.32 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 4 |
| 9 | 43.59 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 7 |
| 35 | 43.99 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 10 |
| 45 | 44.09 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 4 |
| 47 | 44.09 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 48 | 44.10 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 4 |
| 50 | 44.12 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 6 |
| 68 | 44.22 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 5 |
| 70 | 44.22 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 74 | 44.24 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 84 | 44.28 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 5 |
| 93 | 44.33 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 114 | 44.38 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 10 |
| 122 | 44.42 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 8 |
| 140 | 44.50 | temperature | 30 | 720 | < th | dose independent | rect. | 22 | 14 |
| 141 | 44.51 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 144 | 44.53 | temperature | 25 | 90 | > th | dose independent | rect. | 17 | 10 |
| 155 | 44.55 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 15 |
| 170 | 44.60 | temperature | 10 | 720 | > th | dose dependent | sin | 7 | NA |
| 184 | 44.63 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 10 |
| 211 | 44.67 | wind | 1 | 14400 | < th | dose dependent | rect. | 10 | 3 |
| 229 | 44.71 | temperature | 25 | 90 | > th | dose independent | rect. | 17 | 13 |
| 249 | 44.76 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 5 |
| 255 | 44.77 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 2 |
| 275 | 44.80 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 12 |
| 287 | 44.82 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 12 |
| 290 | 44.83 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 8 |
| 295 | 44.84 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 1 |
| 296 | 44.84 | temperature | 30 | 720 | > th | dose independent | rect. | 11 | 3 |
| 310 | 44.86 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 6 |
| 341 | 44.89 | temperature | 30 | 90 | < th | dose independent | rect. | 9 | 10 |
| 344 | 44.89 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 18 |
| 346 | 44.90 | wind | 1 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 354 | 44.91 | temperature | 25 | 270 | > th | dose independent | sin | 13 | NA |
| 363 | 44.92 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 13 |
| 372 | 44.92 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 21 |
| 380 | 44.94 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 391 | 44.97 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 4 |
| 397 | 44.98 | wind | 3 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 402 | 44.99 | wind | 1 | 14400 | < th | dose independent | rect. | 10 | 3 |
| 408 | 45.00 | temperature | 20 | 720 | > th | dose independent | sin | 7 | NA |
| 413 | 45.01 | wind | 3 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 428 | 45.02 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 21 |
| 431 | 45.02 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 7 |
| 469 | 45.06 | wind | 1 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 471 | 45.06 | temperature | 25 | 270 | > th | dose dependent | sin | 12 | NA |
| 489 | 45.08 | temperature | 20 | 720 | < th | dose independent | sin | 7 | NA |
| 497 | 45.08 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 15 |
| 521 | 45.10 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 15 |
| 529 | 45.11 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 548 | 45.13 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 558 | 45.14 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 559 | 45.14 | wind | 1 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 562 | 45.14 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 574 | 45.15 | temperature | 25 | 30 | > th | dose independent | rect. | 4 | 5 |
| 626 | 45.19 | temperature | 25 | 10 | > th | dose independent | rect. | 18 | 10 |
| 650 | 45.21 | temperature | 25 | 10 | > th | dose independent | rect. | 18 | 8 |
| 723 | 45.26 | temperature | 25 | 30 | > th | dose independent | rect. | 2 | 7 |
| 728 | 45.26 | wind | 1 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 763 | 45.28 | wind | 1 | 14400 | < th | dose dependent | rect. | 8 | 6 |
| 854 | 45.35 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 19 |
| 860 | 45.36 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 5 |