BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0110300 Os03g0110300|AK106206
         (172 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0110300  Conserved hypothetical protein                      162   9e-41
Os10g0483900  Conserved hypothetical protein                       84   7e-17

>Os03g0110300 Conserved hypothetical protein
          Length = 172

 Score =  162 bits (411), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 89/147 (60%), Positives = 89/147 (60%)

Query: 26  GRPCGHAQTLLISFSSVSXXXXXXXXXXXXXXXXXXXXXXXXXGPHHPLQIXXXXXXXXX 85
           GRPCGHAQTLLISFSSVS                         GPHHPLQI         
Sbjct: 26  GRPCGHAQTLLISFSSVSRPNPDPNNPTPLTTTVVTVLRVRRLGPHHPLQIPRPDPLPAA 85

Query: 86  XXXXXXVQERAKDILVVVSGLLFGFGCGALTAATMYLVWSLLASTCAPSXXXXXXXXXXX 145
                 VQERAKDILVVVSGLLFGFGCGALTAATMYLVWSLLASTCAPS           
Sbjct: 86  SDAASSVQERAKDILVVVSGLLFGFGCGALTAATMYLVWSLLASTCAPSYDEVYGEDDDD 145

Query: 146 XXXXXXXPKKAGYVIIHDAEQYVGGKN 172
                  PKKAGYVIIHDAEQYVGGKN
Sbjct: 146 ELSDSESPKKAGYVIIHDAEQYVGGKN 172



>Os10g0483900 Conserved hypothetical protein
          Length = 202

 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 46/82 (56%), Positives = 51/82 (62%), Gaps = 2/82 (2%)

Query: 93  QERAKDILVVVSGLLFGFGCGALTAATMYLVWSLLA--STCAPSXXXXXXXXXXXXXXXX 150
           QERAKDILVVV G+LFG GCGALTAA+MYLVWS+LA  +  APS                
Sbjct: 121 QERAKDILVVVVGILFGVGCGALTAASMYLVWSVLAGDAAAAPSPYDELYGDEDEEASDS 180

Query: 151 XXPKKAGYVIIHDAEQYVGGKN 172
             PKK GYVII   E + GG N
Sbjct: 181 ESPKKVGYVIIPGVEAHDGGMN 202



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.137    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,908,968
Number of extensions: 54321
Number of successful extensions: 97
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 2
Length of query: 172
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 78
Effective length of database: 12,127,685
Effective search space: 945959430
Effective search space used: 945959430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 152 (63.2 bits)