BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0475900 Os10g0475900|AK101853
(328 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0475900 Ubiquitin domain containing protein 681 0.0
Os11g0290700 194 5e-50
Os06g0681400 Polyubiquitin 165 5e-41
Os05g0504766 Similar to Polyubiquitin protein (Fragment) 165 5e-41
Os02g0161900 Polyubiquitin 165 5e-41
Os04g0628100 Similar to Polyubiquitin 164 7e-41
AK067024 160 1e-39
Os06g0673500 Similar to Ubiquitin 98 9e-21
Os06g0650100 Similar to Polyubiquitin gene (Fragment) 89 4e-18
Os09g0420800 Similar to Ubiquitin 88 7e-18
Os01g0641200 Ubiquitin domain containing protein 82 5e-16
Os01g0641400 68 1e-11
>Os10g0475900 Ubiquitin domain containing protein
Length = 328
Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/328 (100%), Positives = 328/328 (100%)
Query: 1 MKRRPAMDSHNEQPPPPKSLKIYVKMMKTFTLNVNSTDTVDQIKSKLSAIEGIDKSKQEM 60
MKRRPAMDSHNEQPPPPKSLKIYVKMMKTFTLNVNSTDTVDQIKSKLSAIEGIDKSKQEM
Sbjct: 1 MKRRPAMDSHNEQPPPPKSLKIYVKMMKTFTLNVNSTDTVDQIKSKLSAIEGIDKSKQEM 60
Query: 61 FFAGMHLKNEDKLADYNIMTNSSVDLYVTDAIQISVRIPSVGKTTKLNMRKSNSIADIKA 120
FFAGMHLKNEDKLADYNIMTNSSVDLYVTDAIQISVRIPSVGKTTKLNMRKSNSIADIKA
Sbjct: 61 FFAGMHLKNEDKLADYNIMTNSSVDLYVTDAIQISVRIPSVGKTTKLNMRKSNSIADIKA 120
Query: 121 EIEQEEGILMNEQILMYAGQQLEDNQLLSQCDLRNDQTFHVLVCPNDKLHVFINVRGEKT 180
EIEQEEGILMNEQILMYAGQQLEDNQLLSQCDLRNDQTFHVLVCPNDKLHVFINVRGEKT
Sbjct: 121 EIEQEEGILMNEQILMYAGQQLEDNQLLSQCDLRNDQTFHVLVCPNDKLHVFINVRGEKT 180
Query: 181 IGLETKRWYTVADVKLMIENLEGLPACSQILTRMQSGVGVALTDGRMLQDQHVKNNDTLL 240
IGLETKRWYTVADVKLMIENLEGLPACSQILTRMQSGVGVALTDGRMLQDQHVKNNDTLL
Sbjct: 181 IGLETKRWYTVADVKLMIENLEGLPACSQILTRMQSGVGVALTDGRMLQDQHVKNNDTLL 240
Query: 241 LQQNVQFFVKSWEGKTLTMVLKTSDTGKQIKDRIAEKLRIKESLYYLCHKGRVLLTEDTL 300
LQQNVQFFVKSWEGKTLTMVLKTSDTGKQIKDRIAEKLRIKESLYYLCHKGRVLLTEDTL
Sbjct: 241 LQQNVQFFVKSWEGKTLTMVLKTSDTGKQIKDRIAEKLRIKESLYYLCHKGRVLLTEDTL 300
Query: 301 LDHEVESNSTVYIRLRNSAVVKPNAKKR 328
LDHEVESNSTVYIRLRNSAVVKPNAKKR
Sbjct: 301 LDHEVESNSTVYIRLRNSAVVKPNAKKR 328
>Os11g0290700
Length = 353
Score = 194 bits (494), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 90/189 (47%), Positives = 136/189 (71%)
Query: 89 TDAIQISVRIPSVGKTTKLNMRKSNSIADIKAEIEQEEGILMNEQILMYAGQQLEDNQLL 148
D + ISV+IPS+ KT +L+++KS+ +AD+K +IE +EGI ++ QILMYAG+ L D+Q+L
Sbjct: 149 VDGMCISVKIPSIAKTIELSVKKSDIVADVKLQIELKEGIHLDNQILMYAGRHLGDSQIL 208
Query: 149 SQCDLRNDQTFHVLVCPNDKLHVFINVRGEKTIGLETKRWYTVADVKLMIENLEGLPACS 208
S+C L +D HVLV P DK+ V+IN+R +T+ ++ + WYTVADVKLM+E + G P CS
Sbjct: 209 SECGLSDDHILHVLVSPADKMCVYINIRDTRTVRVDVRNWYTVADVKLMVETMFGFPECS 268
Query: 209 QILTRMQSGVGVALTDGRMLQDQHVKNNDTLLLQQNVQFFVKSWEGKTLTMVLKTSDTGK 268
QIL +SG + L + L+DQ++KNN L+L + F+K+WEG+TLTMV+ + T +
Sbjct: 269 QILLPTKSGDAIELNGTQTLKDQNIKNNAVLMLLPDFPIFIKTWEGRTLTMVVSSFHTEE 328
Query: 269 QIKDRIAEK 277
I ++I +K
Sbjct: 329 DIWEKIQKK 337
>Os06g0681400 Polyubiquitin
Length = 457
Score = 165 bits (417), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 106/306 (34%), Positives = 177/306 (57%), Gaps = 13/306 (4%)
Query: 19 SLKIYVKMM--KTFTLNVNSTDTVDQIKSKLSAIEGIDKSKQEMFFAGMHLKNEDKLADY 76
++I+VK + KT TL V S+DT+D +K+K+ EGI +Q + FAG L++ LADY
Sbjct: 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
Query: 77 NIMTNSSVDLYVT--DAIQISVRIPSVGKTTKLNMRKSNSIADIKAEIEQEEGILMNEQI 134
NI S++ L + +QI V+ + GKT L + S++I ++KA+I+ +EGI ++Q
Sbjct: 136 NIQKESTLHLVLRLRGGMQIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 194
Query: 135 LMYAGQQLEDNQLLSQCDLRNDQTFHVLVCPNDKLHVFINVRGEKTIGLETKRWYTVADV 194
L++AG+QLED + L+ +++ + T H+++ + +F+ KTI LE + T+ +V
Sbjct: 195 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNV 254
Query: 195 KLMIENLEGLPACSQILTRMQSGVGVALTDGRMLQDQHVKNNDT----LLLQQNVQFFVK 250
K I++ EG+P Q L G L DGR L D +++ T L L+ +Q FVK
Sbjct: 255 KAKIQDKEGIPPDQQRLIF----AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVK 310
Query: 251 SWEGKTLTMVLKTSDTGKQIKDRIAEKLRIKESLYYLCHKGRVLLTEDTLLDHEVESNST 310
+ GKT+T+ +++SDT +K +I +K I L G+ L TL D+ ++ ST
Sbjct: 311 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 370
Query: 311 VYIRLR 316
+++ LR
Sbjct: 371 LHLVLR 376
Score = 165 bits (417), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 106/306 (34%), Positives = 177/306 (57%), Gaps = 13/306 (4%)
Query: 19 SLKIYVKMM--KTFTLNVNSTDTVDQIKSKLSAIEGIDKSKQEMFFAGMHLKNEDKLADY 76
++I+VK + KT TL V S+DT+D +K+K+ EGI +Q + FAG L++ LADY
Sbjct: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
Query: 77 NIMTNSSVDLYVT--DAIQISVRIPSVGKTTKLNMRKSNSIADIKAEIEQEEGILMNEQI 134
NI S++ L + +QI V+ + GKT L + S++I ++KA+I+ +EGI ++Q
Sbjct: 212 NIQKESTLHLVLRLRGGMQIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 270
Query: 135 LMYAGQQLEDNQLLSQCDLRNDQTFHVLVCPNDKLHVFINVRGEKTIGLETKRWYTVADV 194
L++AG+QLED + L+ +++ + T H+++ + +F+ KTI LE + T+ +V
Sbjct: 271 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNV 330
Query: 195 KLMIENLEGLPACSQILTRMQSGVGVALTDGRMLQDQHVKNNDTL----LLQQNVQFFVK 250
K I++ EG+P Q L G L DGR L D +++ TL L+ +Q FVK
Sbjct: 331 KAKIQDKEGIPPDQQRLIF----AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVK 386
Query: 251 SWEGKTLTMVLKTSDTGKQIKDRIAEKLRIKESLYYLCHKGRVLLTEDTLLDHEVESNST 310
+ GKT+T+ +++SDT +K +I +K I L G+ L TL D+ ++ ST
Sbjct: 387 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 446
Query: 311 VYIRLR 316
+++ LR
Sbjct: 447 LHLVLR 452
Score = 165 bits (417), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 106/305 (34%), Positives = 177/305 (58%), Gaps = 13/305 (4%)
Query: 20 LKIYVKMM--KTFTLNVNSTDTVDQIKSKLSAIEGIDKSKQEMFFAGMHLKNEDKLADYN 77
++I+VK + KT TL V S+DT+D +K+K+ EGI +Q + FAG L++ LADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 78 IMTNSSVDLY--VTDAIQISVRIPSVGKTTKLNMRKSNSIADIKAEIEQEEGILMNEQIL 135
I S++ L + +QI V+ + GKT L + S++I ++KA+I+ +EGI ++Q L
Sbjct: 61 IQKESTLHLVLRLRGGMQIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 119
Query: 136 MYAGQQLEDNQLLSQCDLRNDQTFHVLVCPNDKLHVFINVRGEKTIGLETKRWYTVADVK 195
++AG+QLED + L+ +++ + T H+++ + +F+ KTI LE + T+ +VK
Sbjct: 120 IFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 179
Query: 196 LMIENLEGLPACSQILTRMQSGVGVALTDGRMLQDQHVKNNDT----LLLQQNVQFFVKS 251
I++ EG+P Q L G L DGR L D +++ T L L+ +Q FVK+
Sbjct: 180 AKIQDKEGIPPDQQRLIF----AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKT 235
Query: 252 WEGKTLTMVLKTSDTGKQIKDRIAEKLRIKESLYYLCHKGRVLLTEDTLLDHEVESNSTV 311
GKT+T+ +++SDT +K +I +K I L G+ L TL D+ ++ ST+
Sbjct: 236 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 295
Query: 312 YIRLR 316
++ LR
Sbjct: 296 HLVLR 300
>Os05g0504766 Similar to Polyubiquitin protein (Fragment)
Length = 381
Score = 165 bits (417), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 106/306 (34%), Positives = 177/306 (57%), Gaps = 13/306 (4%)
Query: 19 SLKIYVKMM--KTFTLNVNSTDTVDQIKSKLSAIEGIDKSKQEMFFAGMHLKNEDKLADY 76
++I+VK + KT TL V S+DT+D +K+K+ EGI +Q + FAG L++ LADY
Sbjct: 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
Query: 77 NIMTNSSVDLYVT--DAIQISVRIPSVGKTTKLNMRKSNSIADIKAEIEQEEGILMNEQI 134
NI S++ L + +QI V+ + GKT L + S++I ++KA+I+ +EGI ++Q
Sbjct: 136 NIQKESTLHLVLRLRGGMQIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 194
Query: 135 LMYAGQQLEDNQLLSQCDLRNDQTFHVLVCPNDKLHVFINVRGEKTIGLETKRWYTVADV 194
L++AG+QLED + L+ +++ + T H+++ + +F+ KTI LE + T+ +V
Sbjct: 195 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNV 254
Query: 195 KLMIENLEGLPACSQILTRMQSGVGVALTDGRMLQDQHVKNNDT----LLLQQNVQFFVK 250
K I++ EG+P Q L G L DGR L D +++ T L L+ +Q FVK
Sbjct: 255 KAKIQDKEGIPPDQQRLIF----AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVK 310
Query: 251 SWEGKTLTMVLKTSDTGKQIKDRIAEKLRIKESLYYLCHKGRVLLTEDTLLDHEVESNST 310
+ GKT+T+ +++SDT +K +I +K I L G+ L TL D+ ++ ST
Sbjct: 311 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 370
Query: 311 VYIRLR 316
+++ LR
Sbjct: 371 LHLVLR 376
Score = 165 bits (417), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 106/305 (34%), Positives = 177/305 (58%), Gaps = 13/305 (4%)
Query: 20 LKIYVKMM--KTFTLNVNSTDTVDQIKSKLSAIEGIDKSKQEMFFAGMHLKNEDKLADYN 77
++I+VK + KT TL V S+DT+D +K+K+ EGI +Q + FAG L++ LADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 78 IMTNSSVDLY--VTDAIQISVRIPSVGKTTKLNMRKSNSIADIKAEIEQEEGILMNEQIL 135
I S++ L + +QI V+ + GKT L + S++I ++KA+I+ +EGI ++Q L
Sbjct: 61 IQKESTLHLVLRLRGGMQIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 119
Query: 136 MYAGQQLEDNQLLSQCDLRNDQTFHVLVCPNDKLHVFINVRGEKTIGLETKRWYTVADVK 195
++AG+QLED + L+ +++ + T H+++ + +F+ KTI LE + T+ +VK
Sbjct: 120 IFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 179
Query: 196 LMIENLEGLPACSQILTRMQSGVGVALTDGRMLQDQHVKNNDT----LLLQQNVQFFVKS 251
I++ EG+P Q L G L DGR L D +++ T L L+ +Q FVK+
Sbjct: 180 AKIQDKEGIPPDQQRLIF----AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKT 235
Query: 252 WEGKTLTMVLKTSDTGKQIKDRIAEKLRIKESLYYLCHKGRVLLTEDTLLDHEVESNSTV 311
GKT+T+ +++SDT +K +I +K I L G+ L TL D+ ++ ST+
Sbjct: 236 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 295
Query: 312 YIRLR 316
++ LR
Sbjct: 296 HLVLR 300
>Os02g0161900 Polyubiquitin
Length = 457
Score = 165 bits (417), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 106/306 (34%), Positives = 177/306 (57%), Gaps = 13/306 (4%)
Query: 19 SLKIYVKMM--KTFTLNVNSTDTVDQIKSKLSAIEGIDKSKQEMFFAGMHLKNEDKLADY 76
++I+VK + KT TL V S+DT+D +K+K+ EGI +Q + FAG L++ LADY
Sbjct: 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
Query: 77 NIMTNSSVDLYVT--DAIQISVRIPSVGKTTKLNMRKSNSIADIKAEIEQEEGILMNEQI 134
NI S++ L + +QI V+ + GKT L + S++I ++KA+I+ +EGI ++Q
Sbjct: 136 NIQKESTLHLVLRLRGGMQIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 194
Query: 135 LMYAGQQLEDNQLLSQCDLRNDQTFHVLVCPNDKLHVFINVRGEKTIGLETKRWYTVADV 194
L++AG+QLED + L+ +++ + T H+++ + +F+ KTI LE + T+ +V
Sbjct: 195 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNV 254
Query: 195 KLMIENLEGLPACSQILTRMQSGVGVALTDGRMLQDQHVKNNDT----LLLQQNVQFFVK 250
K I++ EG+P Q L G L DGR L D +++ T L L+ +Q FVK
Sbjct: 255 KAKIQDKEGIPPDQQRLIF----AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVK 310
Query: 251 SWEGKTLTMVLKTSDTGKQIKDRIAEKLRIKESLYYLCHKGRVLLTEDTLLDHEVESNST 310
+ GKT+T+ +++SDT +K +I +K I L G+ L TL D+ ++ ST
Sbjct: 311 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 370
Query: 311 VYIRLR 316
+++ LR
Sbjct: 371 LHLVLR 376
Score = 165 bits (417), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 106/306 (34%), Positives = 177/306 (57%), Gaps = 13/306 (4%)
Query: 19 SLKIYVKMM--KTFTLNVNSTDTVDQIKSKLSAIEGIDKSKQEMFFAGMHLKNEDKLADY 76
++I+VK + KT TL V S+DT+D +K+K+ EGI +Q + FAG L++ LADY
Sbjct: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
Query: 77 NIMTNSSVDLYVT--DAIQISVRIPSVGKTTKLNMRKSNSIADIKAEIEQEEGILMNEQI 134
NI S++ L + +QI V+ + GKT L + S++I ++KA+I+ +EGI ++Q
Sbjct: 212 NIQKESTLHLVLRLRGGMQIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 270
Query: 135 LMYAGQQLEDNQLLSQCDLRNDQTFHVLVCPNDKLHVFINVRGEKTIGLETKRWYTVADV 194
L++AG+QLED + L+ +++ + T H+++ + +F+ KTI LE + T+ +V
Sbjct: 271 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNV 330
Query: 195 KLMIENLEGLPACSQILTRMQSGVGVALTDGRMLQDQHVKNNDTL----LLQQNVQFFVK 250
K I++ EG+P Q L G L DGR L D +++ TL L+ +Q FVK
Sbjct: 331 KAKIQDKEGIPPDQQRLIF----AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVK 386
Query: 251 SWEGKTLTMVLKTSDTGKQIKDRIAEKLRIKESLYYLCHKGRVLLTEDTLLDHEVESNST 310
+ GKT+T+ +++SDT +K +I +K I L G+ L TL D+ ++ ST
Sbjct: 387 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 446
Query: 311 VYIRLR 316
+++ LR
Sbjct: 447 LHLVLR 452
Score = 165 bits (417), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 106/305 (34%), Positives = 177/305 (58%), Gaps = 13/305 (4%)
Query: 20 LKIYVKMM--KTFTLNVNSTDTVDQIKSKLSAIEGIDKSKQEMFFAGMHLKNEDKLADYN 77
++I+VK + KT TL V S+DT+D +K+K+ EGI +Q + FAG L++ LADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 78 IMTNSSVDLY--VTDAIQISVRIPSVGKTTKLNMRKSNSIADIKAEIEQEEGILMNEQIL 135
I S++ L + +QI V+ + GKT L + S++I ++KA+I+ +EGI ++Q L
Sbjct: 61 IQKESTLHLVLRLRGGMQIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 119
Query: 136 MYAGQQLEDNQLLSQCDLRNDQTFHVLVCPNDKLHVFINVRGEKTIGLETKRWYTVADVK 195
++AG+QLED + L+ +++ + T H+++ + +F+ KTI LE + T+ +VK
Sbjct: 120 IFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 179
Query: 196 LMIENLEGLPACSQILTRMQSGVGVALTDGRMLQDQHVKNNDT----LLLQQNVQFFVKS 251
I++ EG+P Q L G L DGR L D +++ T L L+ +Q FVK+
Sbjct: 180 AKIQDKEGIPPDQQRLIF----AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKT 235
Query: 252 WEGKTLTMVLKTSDTGKQIKDRIAEKLRIKESLYYLCHKGRVLLTEDTLLDHEVESNSTV 311
GKT+T+ +++SDT +K +I +K I L G+ L TL D+ ++ ST+
Sbjct: 236 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 295
Query: 312 YIRLR 316
++ LR
Sbjct: 296 HLVLR 300
>Os04g0628100 Similar to Polyubiquitin
Length = 392
Score = 164 bits (415), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 106/306 (34%), Positives = 177/306 (57%), Gaps = 13/306 (4%)
Query: 19 SLKIYVKMM--KTFTLNVNSTDTVDQIKSKLSAIEGIDKSKQEMFFAGMHLKNEDKLADY 76
++I+VK + KT TL V S+DT+D +K+K+ EGI +Q + FAG L++ LADY
Sbjct: 87 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 146
Query: 77 NIMTNSSVDLYVT--DAIQISVRIPSVGKTTKLNMRKSNSIADIKAEIEQEEGILMNEQI 134
NI S++ L + +QI V+ + GKT L + S++I ++KA+I+ +EGI ++Q
Sbjct: 147 NIQKESTLHLVLRLRGGMQIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 205
Query: 135 LMYAGQQLEDNQLLSQCDLRNDQTFHVLVCPNDKLHVFINVRGEKTIGLETKRWYTVADV 194
L++AG+QLED + L+ +++ + T H+++ + +F+ KTI LE + T+ +V
Sbjct: 206 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNV 265
Query: 195 KLMIENLEGLPACSQILTRMQSGVGVALTDGRMLQDQHVKNNDTL----LLQQNVQFFVK 250
K I++ EG+P Q L G L DGR L D +++ TL L+ +Q FVK
Sbjct: 266 KAKIQDKEGIPPDQQRLIF----AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVK 321
Query: 251 SWEGKTLTMVLKTSDTGKQIKDRIAEKLRIKESLYYLCHKGRVLLTEDTLLDHEVESNST 310
+ GKT+T+ +++SDT +K +I +K I L G+ L TL D+ ++ ST
Sbjct: 322 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 381
Query: 311 VYIRLR 316
+++ LR
Sbjct: 382 LHLVLR 387
Score = 161 bits (408), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 105/305 (34%), Positives = 176/305 (57%), Gaps = 13/305 (4%)
Query: 20 LKIYVKMM--KTFTLNVNSTDTVDQIKSKLSAIEGIDKSKQEMFFAGMHLKNEDKLADYN 77
++I+VK + KT TL V +DT+D +K+K+ EGI +Q + FAG L++ LADYN
Sbjct: 12 MQIFVKTLTGKTITLEVEFSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 71
Query: 78 IMTNSSVDLYVT--DAIQISVRIPSVGKTTKLNMRKSNSIADIKAEIEQEEGILMNEQIL 135
I S++ L + +QI V+ + GKT L + S++I ++KA+I+ +EGI ++Q L
Sbjct: 72 IQKESTLHLVLRLRGGMQIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 130
Query: 136 MYAGQQLEDNQLLSQCDLRNDQTFHVLVCPNDKLHVFINVRGEKTIGLETKRWYTVADVK 195
++AG+QLED + L+ +++ + T H+++ + +F+ KTI LE + T+ +VK
Sbjct: 131 IFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 190
Query: 196 LMIENLEGLPACSQILTRMQSGVGVALTDGRMLQDQHVKNNDT----LLLQQNVQFFVKS 251
I++ EG+P Q L G L DGR L D +++ T L L+ +Q FVK+
Sbjct: 191 AKIQDKEGIPPDQQRLIF----AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKT 246
Query: 252 WEGKTLTMVLKTSDTGKQIKDRIAEKLRIKESLYYLCHKGRVLLTEDTLLDHEVESNSTV 311
GKT+T+ +++SDT +K +I +K I L G+ L TL D+ ++ ST+
Sbjct: 247 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 306
Query: 312 YIRLR 316
++ LR
Sbjct: 307 HLVLR 311
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 81/153 (52%), Gaps = 8/153 (5%)
Query: 168 KLHVFINVRGEKTIGLETKRWYTVADVKLMIENLEGLPACSQILTRMQSGVGVALTDGRM 227
++ +F+ KTI LE + T+ +VK I++ EG+P Q L G L DGR
Sbjct: 11 QMQIFVKTLTGKTITLEVEFSDTIDNVKAKIQDKEGIPPDQQRLIF----AGKQLEDGRT 66
Query: 228 LQDQHVKNNDT----LLLQQNVQFFVKSWEGKTLTMVLKTSDTGKQIKDRIAEKLRIKES 283
L D +++ T L L+ +Q FVK+ GKT+T+ +++SDT +K +I +K I
Sbjct: 67 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD 126
Query: 284 LYYLCHKGRVLLTEDTLLDHEVESNSTVYIRLR 316
L G+ L TL D+ ++ ST+++ LR
Sbjct: 127 QQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 159
>AK067024
Length = 305
Score = 160 bits (405), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 104/305 (34%), Positives = 175/305 (57%), Gaps = 13/305 (4%)
Query: 20 LKIYVKMM--KTFTLNVNSTDTVDQIKSKLSAIEGIDKSKQEMFFAGMHLKNEDKLADYN 77
++I+VK + KT TL V S+DT+D +K+K+ EGI +Q + FAG L++ LADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 78 IMTNSSVDLY--VTDAIQISVRIPSVGKTTKLNMRKSNSIADIKAEIEQEEGILMNEQIL 135
I S++ L + +QI V+ + GKT L + S++I ++KA+I+ +EGI ++Q L
Sbjct: 61 IQKESTLHLVLRLRGGMQIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 119
Query: 136 MYAGQQLEDNQLLSQCDLRNDQTFHVLVCPNDKLHVFINVRGEKTIGLETKRWYTVADVK 195
++AG+QLED + L+ +++ + T H+++ + +F+ KTI LE + T+ +VK
Sbjct: 120 IFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 179
Query: 196 LMIENLEGLPACSQILTRMQSGVGVALTDGRMLQDQHVKNNDT----LLLQQNVQFFVKS 251
I++ EG+P Q L G L DGR L D +++ T L L+ +Q FVK+
Sbjct: 180 AKIQDKEGIPPDQQRLIF----AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKT 235
Query: 252 WEGKTLTMVLKTSDTGKQIKDRIAEKLRIKESLYYLCHKGRVLLTEDTLLDHEVESNSTV 311
GKT+T+ +++SDT +K +I +K I L G+ L TL D+ ++ S +
Sbjct: 236 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESLL 295
Query: 312 YIRLR 316
++ R
Sbjct: 296 HLVFR 300
>Os06g0673500 Similar to Ubiquitin
Length = 187
Score = 97.8 bits (242), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 105/179 (58%), Gaps = 12/179 (6%)
Query: 20 LKIYVKMM--KTFTLNVNSTDTVDQIKSKLSAIEGIDKSKQEMFFAGMHLKNEDKLADYN 77
++I+VK + KT TL V S+DT+D +K+K+ EGI +Q + FAG L++ LADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 78 IMTNSSVDLY--VTDAIQISVRIPSVGKTTKLNMRKSNSIADIKAEIEQEEGILMNEQIL 135
I S++ L + +QI V+ + GKT L + S+ I ++KA+I+ +EGI ++Q L
Sbjct: 61 IQKESTLHLVLRLRGGMQIFVKTLT-GKTITLAVESSDKIDNVKAKIQDKEGIPPDQQRL 119
Query: 136 MYAGQQLEDNQLLSQCDLRNDQTFHVLVCPNDKLHVFINVRGEKTIGLETKRWYTVADV 194
++A +QLED + L+ +++ + T H+++ +L V R T G RW +V
Sbjct: 120 IFADKQLEDGRTLADYNIQKESTLHLVL----RLRVAGRFRCFATPG---GRWLCANEV 171
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 79/140 (56%), Gaps = 4/140 (2%)
Query: 102 GKTTKLNMRKSNSIADIKAEIEQEEGILMNEQILMYAGQQLEDNQLLSQCDLRNDQTFHV 161
GKT L + S++I ++KA+I+ +EGI ++Q L++AG+QLED + L+ +++ + T H+
Sbjct: 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 69
Query: 162 LVCPNDKLHVFINVRGEKTIGLETKRWYTVADVKLMIENLEGLPACSQILTRMQSGVGVA 221
++ + +F+ KTI L + + +VK I++ EG+P Q L
Sbjct: 70 VLRLRGGMQIFVKTLTGKTITLAVESSDKIDNVKAKIQDKEGIPPDQQRLIFADK----Q 125
Query: 222 LTDGRMLQDQHVKNNDTLLL 241
L DGR L D +++ TL L
Sbjct: 126 LEDGRTLADYNIQKESTLHL 145
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 78/152 (51%), Gaps = 8/152 (5%)
Query: 169 LHVFINVRGEKTIGLETKRWYTVADVKLMIENLEGLPACSQILTRMQSGVGVALTDGRML 228
+ +F+ KTI LE + T+ +VK I++ EG+P Q L G L DGR L
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF----AGKQLEDGRTL 56
Query: 229 QDQHVKNNDTL----LLQQNVQFFVKSWEGKTLTMVLKTSDTGKQIKDRIAEKLRIKESL 284
D +++ TL L+ +Q FVK+ GKT+T+ +++SD +K +I +K I
Sbjct: 57 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLAVESSDKIDNVKAKIQDKEGIPPDQ 116
Query: 285 YYLCHKGRVLLTEDTLLDHEVESNSTVYIRLR 316
L + L TL D+ ++ ST+++ LR
Sbjct: 117 QRLIFADKQLEDGRTLADYNIQKESTLHLVLR 148
>Os06g0650100 Similar to Polyubiquitin gene (Fragment)
Length = 177
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 89/149 (59%), Gaps = 3/149 (2%)
Query: 19 SLKIYVKMM--KTFTLNVNSTDTVDQIKSKLSAIEGIDKSKQEMFFAGMHLKNEDKLADY 76
++I+VK + KT TL V S+DT+D +K+K+ EGI +Q + FAG L++ LADY
Sbjct: 24 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 83
Query: 77 NIMTNSSVDLYVTDAIQISVRIPSV-GKTTKLNMRKSNSIADIKAEIEQEEGILMNEQIL 135
NI S++ L + +++ ++ GK ++++ +++I IK +E++EGI +Q L
Sbjct: 84 NIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRL 143
Query: 136 MYAGQQLEDNQLLSQCDLRNDQTFHVLVC 164
+YAG+QL D++ ++ H+++
Sbjct: 144 IYAGKQLADDKTAKDYNIEGGSVLHLVLA 172
>Os09g0420800 Similar to Ubiquitin
Length = 153
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 89/148 (60%), Gaps = 3/148 (2%)
Query: 20 LKIYVKMM--KTFTLNVNSTDTVDQIKSKLSAIEGIDKSKQEMFFAGMHLKNEDKLADYN 77
++I+VK + KT TL V S+DT+D +K+K+ EGI +Q + FAG L++ LADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 78 IMTNSSVDLYVTDAIQISVRIPSV-GKTTKLNMRKSNSIADIKAEIEQEEGILMNEQILM 136
I S++ L + +++ ++ GK ++++ +++I IK +E++EGI +Q L+
Sbjct: 61 IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
Query: 137 YAGQQLEDNQLLSQCDLRNDQTFHVLVC 164
YAG+QL D++ ++ H+++
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLA 148
>Os01g0641200 Ubiquitin domain containing protein
Length = 154
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 86/148 (58%), Gaps = 3/148 (2%)
Query: 20 LKIYVKMM--KTFTLNVNSTDTVDQIKSKLSAIEGIDKSKQEMFFAGMHLKNEDKLADYN 77
++I+VK + KT TL V S+DT+ +K+K+ EGI +Q + FAG L++ LADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIQNVKAKVQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 78 IMTNSSVDLYVTDAIQISVRIPSV-GKTTKLNMRKSNSIADIKAEIEQEEGILMNEQILM 136
I S++ L + ++V++ ++ GK +++ ++++ IK +E+ EGI +Q L+
Sbjct: 61 IQKESTLHLVLRLRGGLNVKVRTLTGKEIDIDIEMTDTVDRIKERVEEREGIPPVQQRLI 120
Query: 137 YAGQQLEDNQLLSQCDLRNDQTFHVLVC 164
Y G+QL D++ + H+++
Sbjct: 121 YGGKQLADDKTAHDYKIEAGSVLHLVLA 148
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 77/140 (55%), Gaps = 4/140 (2%)
Query: 102 GKTTKLNMRKSNSIADIKAEIEQEEGILMNEQILMYAGQQLEDNQLLSQCDLRNDQTFHV 161
GKT L + S++I ++KA+++ +EGI ++Q L++AG+QLED + L+ +++ + T H+
Sbjct: 10 GKTITLEVESSDTIQNVKAKVQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 69
Query: 162 LVCPNDKLHVFINVRGEKTIGLETKRWYTVADVKLMIENLEGLPACSQILTRMQSGVGVA 221
++ L+V + K I ++ + TV +K +E EG+P Q R+ G G
Sbjct: 70 VLRLRGGLNVKVRTLTGKEIDIDIEMTDTVDRIKERVEEREGIPPVQQ---RLIYG-GKQ 125
Query: 222 LTDGRMLQDQHVKNNDTLLL 241
L D + D ++ L L
Sbjct: 126 LADDKTAHDYKIEAGSVLHL 145
>Os01g0641400
Length = 152
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 81/139 (58%), Gaps = 12/139 (8%)
Query: 20 LKIYVKMM--KTFTLNVNSTDTVDQIKSKLSAIEGIDKSKQEMFFAGMHLKNEDKLADYN 77
++I+VK + +T TL V+S D+V+ +K+++ EG+ +Q + FAG L++ LADYN
Sbjct: 1 MQIFVKTLNGRTITLVVDSCDSVENVKARIHDREGVPPHQQRLIFAGKQLEDGRTLADYN 60
Query: 78 IMTNSSVDLYV---TDAIQISVRIPSVGKTTKLNMRKSNSIADIKAEIEQEEGILMNEQI 134
I S++ L + I V++ + GK +++ ++++ IK I++ EG
Sbjct: 61 IQKESTLHLVLRLRRGMNDIKVKMLT-GKEIDVDIEPTDTMGRIKERIDEREG------R 113
Query: 135 LMYAGQQLEDNQLLSQCDL 153
L+Y G+QL D++ + + D+
Sbjct: 114 LVYGGKQLADDKTVHEYDI 132
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.131 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,682,065
Number of extensions: 355471
Number of successful extensions: 1405
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 1326
Number of HSP's successfully gapped: 37
Length of query: 328
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 227
Effective length of database: 11,762,187
Effective search space: 2670016449
Effective search space used: 2670016449
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)