BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0469200 Os10g0469200|J065114J03
         (169 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0469200  Conserved hypothetical protein                      306   3e-84
Os10g0469100  Conserved hypothetical protein                      228   2e-60

>Os10g0469200 Conserved hypothetical protein
          Length = 169

 Score =  306 bits (785), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 157/169 (92%), Positives = 157/169 (92%)

Query: 1   MSSGQLVNNAGGISPVRLFVEMPKYRIARIPANSGGKPPESRFKDSSKKMRFFRFPSCDG 60
           MSSGQLVNNAGGISPVRLFVEMPKYRIARIPANSGGKPPESRFKDSSKKMRFFRFPSCDG
Sbjct: 1   MSSGQLVNNAGGISPVRLFVEMPKYRIARIPANSGGKPPESRFKDSSKKMRFFRFPSCDG 60

Query: 61  RVETRPEFLMSSRCSIWSRPRTGGIAPPSWLSPSSRILNCGIDPRNSGMPPVRLLPAIRR 120
           RVETRPEFLMSSRCSIWSRPRTGGIAPPSWLSPSSRILNCGIDPRNSGMPPVRLLPAIRR
Sbjct: 61  RVETRPEFLMSSRCSIWSRPRTGGIAPPSWLSPSSRILNCGIDPRNSGMPPVRLLPAIRR 120

Query: 121 SCSFINFPSDAGIEPENALMDRLRYLRXXXXXXXXXXXXPNRVFCDRSR 169
           SCSFINFPSDAGIEPENALMDRLRYLR            PNRVFCDRSR
Sbjct: 121 SCSFINFPSDAGIEPENALMDRLRYLRFGSFSGSVSGIFPNRVFCDRSR 169



>Os10g0469100 Conserved hypothetical protein
          Length = 188

 Score =  228 bits (581), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 116/169 (68%), Positives = 127/169 (75%)

Query: 1   MSSGQLVNNAGGISPVRLFVEMPKYRIARIPANSGGKPPESRFKDSSKKMRFFRFPSCDG 60
           MSSGQLVNN  GISPV  F+  P  RIA IPAN+GGKPPE  F D S+K+RF RFPS  G
Sbjct: 20  MSSGQLVNNTEGISPVSPFISSPNSRIAHIPANAGGKPPERWFTDISRKVRFLRFPSSGG 79

Query: 61  RVETRPEFLMSSRCSIWSRPRTGGIAPPSWLSPSSRILNCGIDPRNSGMPPVRLLPAIRR 120
           RVET P F + SRCSIWS PRTGGIAPPSWLSPSSRILNC IDPRNSG PPVRLL AI R
Sbjct: 80  RVETSPAFFILSRCSIWSWPRTGGIAPPSWLSPSSRILNCDIDPRNSGTPPVRLLAAISR 139

Query: 121 SCSFINFPSDAGIEPENALMDRLRYLRXXXXXXXXXXXXPNRVFCDRSR 169
           S SF+N  SDAGI PEN+L+D+ RY+R            PNRVFCD+SR
Sbjct: 140 SWSFVNLLSDAGIRPENSLLDKFRYIRFGSFSGSVSGISPNRVFCDKSR 188



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.139    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,705,629
Number of extensions: 299762
Number of successful extensions: 627
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 624
Number of HSP's successfully gapped: 2
Length of query: 169
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 75
Effective length of database: 12,127,685
Effective search space: 909576375
Effective search space used: 909576375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 152 (63.2 bits)