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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0469200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.72 (0.0387) R2 : 0.293
β1 : 1.63 (0.144) R2dD : 0.21 R2D : 0.178
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.07 (0.147) R2dE : 0.0874 R2E : 0.00683
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.381 (0.083) R2dN8 : 0.0433 R2N8 : 0.0497
σ : 0.719
deviance : 236.28
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1000
memory length : 251
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
222.66 0.701 5.33 3.7 0.153 6.89 0.798 -32.9 -0.377 7.47 1000 251 -- --
232.72 0.716 5.71 1.6 0.189 1.07 0.697 -- -0.383 8.64 1000 251 -- --
223.77 0.702 5.39 3.45 0.159 5.73 -- -26.5 -0.383 9.59 1000 251 -- --
234.1 0.717 5.71 1.63 0.191 1.07 -- -- -0.381 9.87 1000 251 -- --
225.26 0.703 5.38 3.5 -- 5.86 -- -27.2 -0.383 -- 1000 251 -- --
264.87 0.763 5.69 1.41 0.185 -- 0.789 -- -0.309 8 -- -- -- --
266.49 0.764 5.69 1.43 0.19 -- -- -- -0.308 9.26 -- -- -- --
236.28 0.719 5.72 1.63 -- 1.07 -- -- -0.381 -- 1000 251 -- --
301.99 0.814 5.75 -- 0.189 0.799 -- -- -0.539 9.09 1000 251 -- --
268.59 0.766 5.7 1.43 -- -- -- -- -0.307 -- -- -- -- --
320.59 0.838 5.73 -- 0.192 -- -- -- -0.468 8.7 -- -- -- --
304.05 0.815 5.75 -- -- 0.8 -- -- -0.538 -- 1000 251 -- --
322.67 0.838 5.74 -- -- -- -- -- -0.466 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 205.74 atmosphere 1000 10 > th dose independent rect. 11 23
3 209.16 wind 9 14400 > th dose dependent rect. 22 16
7 210.41 wind 9 14400 > th dose dependent rect. 3 11
36 211.28 wind 9 14400 > th dose dependent rect. 11 3
37 211.31 wind 9 14400 > th dose independent rect. 11 3
38 211.31 temperature 30 14400 > th dose dependent rect. 8 1
55 211.50 wind 9 14400 > th dose dependent rect. 11 6
56 211.51 wind 9 14400 > th dose independent rect. 22 16
58 211.59 wind 9 14400 > th dose independent rect. 3 14
61 211.64 wind 9 14400 > th dose independent rect. 23 18
72 211.92 wind 9 14400 > th dose independent rect. 3 11
76 211.94 wind 9 14400 > th dose independent rect. 15 1
78 211.99 wind 9 14400 > th dose dependent rect. 9 5
86 212.04 wind 9 14400 > th dose independent rect. 11 6
98 212.28 temperature 25 4320 < th dose independent rect. 1 1
121 213.00 wind 9 14400 > th dose dependent sin 4 NA
127 213.37 wind 9 14400 < th dose independent rect. 15 1
129 213.46 temperature 25 4320 > th dose independent rect. 24 1
131 213.53 wind 9 14400 > th dose independent rect. 9 5
140 213.91 wind 9 14400 > th dose independent sin 4 NA
168 215.79 wind 9 14400 > th dose dependent rect. 15 1
180 216.70 temperature 30 14400 > th dose independent rect. 8 1
196 217.22 wind 9 14400 < th dose independent rect. 3 14
201 217.66 wind 9 14400 < th dose independent rect. 23 18
202 217.68 wind 9 14400 < th dose independent rect. 11 6
204 217.81 wind 9 14400 < th dose independent rect. 13 4
206 217.90 wind 9 14400 < th dose independent rect. 11 3
221 218.65 wind 9 14400 < th dose independent rect. 22 16
224 218.70 wind 9 14400 < th dose independent rect. 13 1
251 219.87 temperature 30 14400 < th dose independent rect. 4 5
255 219.96 temperature 30 14400 < th dose independent rect. 1 8
265 220.32 wind 9 14400 < th dose independent sin 4 NA
267 220.40 wind 1 14400 < th dose dependent rect. 9 2
269 220.43 temperature 30 14400 < th dose independent rect. 19 14
273 220.54 temperature 30 14400 < th dose independent rect. 23 10
280 220.76 temperature 10 270 > th dose dependent rect. 6 18
286 221.02 temperature 25 4320 > th dose dependent rect. 24 1
318 222.18 atmosphere 1000 270 < th dose independent rect. 5 21
343 222.82 atmosphere 1000 270 > th dose independent rect. 11 20
346 222.86 wind 9 14400 > th dose independent rect. 23 21
397 223.55 radiation 10 4320 < th dose independent rect. 15 2
403 223.69 atmosphere 1000 270 > th dose independent no NA NA
406 223.71 humidity 80 14400 < th dose dependent rect. 4 1
409 223.78 wind 9 14400 > th dose independent rect. 11 9
410 223.78 atmosphere 995 90 > th dose dependent rect. 11 22
423 223.96 atmosphere 1000 270 < th dose independent rect. 10 23
445 224.21 atmosphere 1000 270 < th dose independent rect. 13 23
448 224.24 atmosphere 1000 270 < th dose independent no NA NA
457 224.34 atmosphere 1000 90 < th dose independent rect. 15 23
458 224.34 atmosphere 1000 270 < th dose independent rect. 20 23
478 224.66 atmosphere 1000 30 < th dose independent rect. 17 23
482 224.68 atmosphere 1000 30 < th dose independent rect. 11 23
485 224.69 radiation 10 4320 < th dose independent rect. 15 15
487 224.69 atmosphere 1000 30 < th dose independent rect. 23 23
495 224.77 atmosphere 1000 30 < th dose independent rect. 1 23
512 224.97 humidity 90 14400 < th dose dependent rect. 1 1
525 225.18 atmosphere 1000 10 > th dose independent no NA NA
552 225.35 wind 9 14400 > th dose dependent rect. 18 23
561 225.42 temperature 25 270 < th dose independent rect. 24 10
597 225.78 radiation 30 4320 < th dose independent rect. 15 7
598 225.78 radiation 30 4320 < th dose independent rect. 15 9
599 225.78 wind 9 14400 > th dose independent rect. 19 22
601 225.79 radiation 10 4320 < th dose independent rect. 15 7
605 225.80 radiation 10 4320 < th dose independent rect. 15 9
613 225.83 radiation 30 4320 < th dose independent rect. 15 15
627 225.92 radiation 10 4320 < th dose independent rect. 15 11
651 226.12 atmosphere 995 270 > th dose dependent rect. 11 19
660 226.18 radiation 30 4320 < th dose independent rect. 15 11
661 226.18 radiation 10 4320 > th dose dependent rect. 16 1
663 226.19 atmosphere 995 10 > th dose dependent rect. 11 23
675 226.27 atmosphere 1000 270 > th dose independent rect. 13 17
678 226.28 temperature 25 270 < th dose independent rect. 24 21
684 226.30 wind 9 14400 > th dose dependent rect. 22 22
691 226.42 radiation 10 4320 > th dose independent rect. 15 2
694 226.45 wind 9 14400 > th dose dependent rect. 3 17
778 227.02 temperature 25 270 > th dose independent rect. 24 11
795 227.14 wind 1 14400 < th dose dependent rect. 2 1
797 227.18 wind 9 14400 > th dose dependent rect. 11 9
828 227.32 atmosphere 1000 270 > th dose independent sin 17 NA
858 227.49 radiation 10 4320 > th dose dependent rect. 16 14
897 227.66 temperature 25 4320 < th dose independent rect. 20 1
907 227.71 wind 9 14400 < th dose independent rect. 3 17
911 227.73 atmosphere 1000 270 < th dose independent sin 17 NA
931 227.84 humidity 80 14400 < th dose dependent rect. 20 10
968 228.03 temperature 15 10 > th dose dependent rect. 7 21
981 228.10 wind 9 14400 < th dose independent rect. 23 21
992 228.13 wind 1 14400 < th dose independent rect. 9 3
999 228.19 atmosphere 1000 10 > th dose independent rect. 12 20