BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0466000 Os10g0466000|AK073137
(557 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0466000 Conserved hypothetical protein 917 0.0
Os03g0140900 Conserved hypothetical protein 177 1e-44
Os10g0573200 Conserved hypothetical protein 95 1e-19
>Os10g0466000 Conserved hypothetical protein
Length = 557
Score = 917 bits (2371), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/537 (84%), Positives = 453/537 (84%)
Query: 1 MGSAMDVVDISSDEEGFXXXXXXXXXXXXXXSVDSLGWIADLLREEDERALSDEFDDLEV 60
MGSAMDVVDISSDEEGF SVDSLGWIADLLREEDERALSDEFDDLEV
Sbjct: 1 MGSAMDVVDISSDEEGFAAAAVAVATTTKKASVDSLGWIADLLREEDERALSDEFDDLEV 60
Query: 61 MSELSAPPVMAQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQIV 120
MSELSAPPVMAQQ LQIV
Sbjct: 61 MSELSAPPVMAQQKGGKPDCGGEEDDDDCVVLDGDPDDVVAVAGEKGSEGDGSSDELQIV 120
Query: 121 AEKGPVACRDFPHSRHLCSNLPFSTTSHVKYCSMCHCFVCDTPAPCNYWGKGTEIYDHCH 180
AEKGPVACRDFPHSRHLCSNLPFSTTSHVKYCSMCHCFVCDTPAPCNYWGKGTEIYDHCH
Sbjct: 121 AEKGPVACRDFPHSRHLCSNLPFSTTSHVKYCSMCHCFVCDTPAPCNYWGKGTEIYDHCH 180
Query: 181 ATDKEKKWKAMRHTFKSKGLPTSHPEKRQNVVYPTTTSFVQQDTQCEISLIQSHMTTYFP 240
ATDKEKKWKAMRHTFKSKGLPTSHPEKRQNVVYPTTTSFVQQDTQCEISLIQSHMTTYFP
Sbjct: 181 ATDKEKKWKAMRHTFKSKGLPTSHPEKRQNVVYPTTTSFVQQDTQCEISLIQSHMTTYFP 240
Query: 241 NQSHLANVVNQGLTQTRHTSVRVSPSVGXXXXXXXXXXXXXXGRGMSNAPSIQIPQSRTR 300
NQSHLANVVNQGLTQTRHTSVRVSPSVG GRGMSNAPSIQIPQSRTR
Sbjct: 241 NQSHLANVVNQGLTQTRHTSVRVSPSVGRTVSATRTTPATRAGRGMSNAPSIQIPQSRTR 300
Query: 301 FKRVGATSPGIVTLNDNQFGSAAPNNTQLHQPSSPHASQPAQVAPRTLFGTVQKNPPQRS 360
FKRVGATSPGIVTLNDNQFGSAAPNNTQLHQPSSPHASQPAQVAPRTLFGTVQKNPPQRS
Sbjct: 301 FKRVGATSPGIVTLNDNQFGSAAPNNTQLHQPSSPHASQPAQVAPRTLFGTVQKNPPQRS 360
Query: 361 LSAPIALQGXXXXXXXXXXXXXNGTHGTGPQFSRCISLTAQRTQLLPEPALDVYSKSWQD 420
LSAPIALQG NGTHGTGPQFSRCISLTAQRTQLLPEPALDVYSKSWQD
Sbjct: 361 LSAPIALQGQQDQSASSYQAASNGTHGTGPQFSRCISLTAQRTQLLPEPALDVYSKSWQD 420
Query: 421 IIDSLASDLEVPDYNMGAAESQQPDRTISQPLDSITFQGVGLHSEPVVALANLMPCNGQN 480
IIDSLASDLEVPDYNMGAAESQQPDRTISQPLDSITFQGVGLHSEPVVALANLMPCNGQN
Sbjct: 421 IIDSLASDLEVPDYNMGAAESQQPDRTISQPLDSITFQGVGLHSEPVVALANLMPCNGQN 480
Query: 481 VANGMIGSNCLAQTTQILPHLNHQPSLVPNESHLNNSVSSTADGLLMEAAHQRDTQG 537
VANGMIGSNCLAQTTQILPHLNHQPSLVPNESHLNNSVSSTADGLLMEAAHQRDTQG
Sbjct: 481 VANGMIGSNCLAQTTQILPHLNHQPSLVPNESHLNNSVSSTADGLLMEAAHQRDTQG 537
>Os03g0140900 Conserved hypothetical protein
Length = 524
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 139/426 (32%), Positives = 192/426 (45%), Gaps = 77/426 (18%)
Query: 117 LQIVAEKGPVACRDFPHSRHLCSNLPFSTTSHVKYCSMCHCFVCDTPAPCNYWGKGTEIY 176
LQIV+EKG +ACRDFPH RHLC ++PF T+SH +C+MCHC+VCD+PAPC +WGKGTE
Sbjct: 108 LQIVSEKGEIACRDFPHPRHLCVSMPF-TSSHADHCAMCHCYVCDSPAPCAFWGKGTEPT 166
Query: 177 DHCHATDKEKKWKAMRHTFKSKGLPTSHPEKRQNVVYPTTTSF---VQQDTQCEISLIQS 233
DHCHATDK KW MR + K K LP+S+ +N P + + +QQ T S+ +
Sbjct: 167 DHCHATDKNAKWTKMRQSLKRKNLPSSNRRGIKNHFQPISATASLQLQQYTGDRFSVPR- 225
Query: 234 HMTTYFPNQSHLANVVNQGLTQTRHTSVRVSPSVGXXXXXXXXXXXXXXGRGMSNAPSIQ 293
++ P H++ V+Q Q + V P+VG + P
Sbjct: 226 -LSPLSPVGFHVSRNVSQ--NQWMMKLIGVPPNVGQPVNLQE-----------ATFPRAS 271
Query: 294 IPQSRTRFKRVGATSPGIVTLNDNQFGSAAPNN------------TQLHQPSSPHASQPA 341
IP R RF+ G+ P ++ N N APN+ T QP+S SQ +
Sbjct: 272 IP--RKRFRSDGSAPPVHLSTNANHLRHPAPNSVLVQPVSSAAFQTTQSQPASSAVSQNS 329
Query: 342 QVAPRTL-FGTVQKNPP-----QRSLSAPIALQGXXXXXXXXXXXXXNGT--HGTGP--- 390
A R L T Q PP Q S++A L+G T H P
Sbjct: 330 VSAARPLRVQTTQSQPPSSAVSQNSVTAARPLRGYSPQNSFSAPVRVQSTSYHQVAPGIS 389
Query: 391 -----------------------QFSRCISLTAQRTQLLPEPALDVYSKSWQDIIDSLAS 427
Q S+C SL Q Q +P+ D+Y W++ + LAS
Sbjct: 390 QGLQVQSTSYLQVDPGRAVSAELQLSQCSSLQTQGIQHQHDPSADIYQNIWKEALAKLAS 449
Query: 428 DLEVPDYNMGA----AESQQPD------RTISQPLDSITFQGVGLHSEPVVALANLMPCN 477
+L V DYN+ + QP+ R QP + QGV + V A + N
Sbjct: 450 ELGVSDYNIDPPGRLPSTPQPNQLHAQMRPGHQPTQATARQGVQANGGHVAAASQKRTSN 509
Query: 478 GQNVAN 483
G ++ N
Sbjct: 510 GHHLPN 515
>Os10g0573200 Conserved hypothetical protein
Length = 406
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 50/74 (67%), Gaps = 3/74 (4%)
Query: 122 EKGPVACRDFPHSRHLCSNLPFSTTSHVKYCSMCHCFVCDTPAPCNYWGKGTEIYDHCHA 181
E+G VACRD+PH R C+ PF TT H +C C C+VCD PAPC+ W KG + HCHA
Sbjct: 112 ERGKVACRDYPHPRSACAKFPFGTTPHDDHCEQCFCYVCDVPAPCSSW-KGEK--GHCHA 168
Query: 182 TDKEKKWKAMRHTF 195
+DK+KKWKA F
Sbjct: 169 SDKDKKWKAWGWPF 182
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.128 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,591,131
Number of extensions: 655902
Number of successful extensions: 1586
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1580
Number of HSP's successfully gapped: 4
Length of query: 557
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 451
Effective length of database: 11,501,117
Effective search space: 5187003767
Effective search space used: 5187003767
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 159 (65.9 bits)