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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0140900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.64 (0.0399) R2 : 0.759
β1 : 4.72 (0.155) R2dD : 0.575 R2D : 0.595
β2 : 1.21 (0.103) R2dC : 0.0741 R2C : 0.0538
β3 : 1.02 (0.137) R2dE : 0.0361 R2E : 0.133
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.678 (0.0881) R2dN8 : 0.045 R2N8 : -0.00733
σ : 0.739
deviance : 251.66
__
_____
C
peak time of C : 17.4
E
wheather : temperature
threshold : 26.02
memory length : 5180
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
250.6 0.744 5.69 4.33 1.21 1.12 0.0136 -1.23 0.574 17.4 26 5180 -- --
253.14 0.741 5.68 4.69 1.2 1.12 -0.0648 -- 0.576 17.3 25.94 5234 -- --
250.6 0.737 5.69 4.33 1.21 1.12 -- -1.23 0.574 17.4 26 5180 -- --
251.66 0.739 5.64 4.72 1.21 1.02 -- -- 0.678 17.4 26.02 5180 -- --
323.01 0.837 5.66 4.31 -- 1.18 -- -1.2 0.586 -- 26.65 4980 -- --
282.98 0.789 5.6 5.11 1.23 -- -0.0374 -- 0.864 17.7 -- -- -- --
282.99 0.788 5.6 5.11 1.23 -- -- -- 0.864 17.7 -- -- -- --
323.63 0.842 5.62 4.94 -- 0.609 -- -- 0.654 -- 26.02 5180 -- --
319.83 0.833 5.96 -- 1.25 3.92 -- -- -0.761 17.5 19.4 47520 -- --
361.98 0.889 5.58 5.07 -- -- -- -- 0.834 -- -- -- -- --
970.16 1.46 5.73 -- 1.15 -- -- -- 0.295 17.9 -- -- -- --
401.48 0.933 5.94 -- -- 3.89 -- -- -0.762 -- 19.16 47520 -- --
1039.29 1.5 5.71 -- -- -- -- -- 0.272 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 244.75 wind 1 43200 < th dose independent rect. 17 12
2 245.00 wind 1 43200 > th dose independent rect. 17 12
7 246.14 wind 1 43200 < th dose independent rect. 20 8
12 246.99 wind 1 43200 > th dose independent rect. 20 8
14 247.13 wind 1 43200 > th dose independent rect. 22 6
16 247.32 wind 1 43200 < th dose dependent rect. 16 13
18 247.47 wind 1 43200 < th dose dependent sin 13 NA
39 249.03 temperature 25 4320 > th dose independent rect. 9 3
41 249.19 wind 1 43200 < th dose independent sin 14 NA
43 249.28 temperature 25 4320 < th dose independent rect. 9 2
44 249.32 wind 1 43200 < th dose dependent rect. 22 6
48 249.68 wind 1 43200 < th dose dependent rect. 20 9
50 249.78 wind 9 43200 > th dose independent rect. 16 1
57 249.92 wind 7 43200 > th dose dependent rect. 15 1
59 250.06 radiation 1 43200 < th dose independent rect. 13 1
60 250.06 radiation 1 43200 < th dose dependent rect. 13 1
61 250.07 radiation 1 43200 > th dose independent rect. 13 1
64 250.13 temperature 20 4320 > th dose independent rect. 4 1
66 250.13 wind 7 43200 > th dose dependent rect. 13 5
67 250.17 wind 1 43200 > th dose independent sin 13 NA
70 250.22 temperature 20 4320 < th dose independent rect. 4 1
71 250.25 temperature 25 4320 < th dose dependent rect. 5 10
72 250.26 wind 3 1440 > th dose independent rect. 11 9
81 250.36 temperature 25 4320 < th dose dependent rect. 6 4
83 250.41 wind 3 1440 > th dose independent rect. 13 7
87 250.52 wind 3 1440 < th dose independent rect. 11 9
95 250.59 temperature 25 4320 < th dose dependent rect. 7 1
96 250.60 wind 3 1440 < th dose independent rect. 13 7
97 250.60 temperature 20 14400 < th dose dependent rect. 21 6
107 250.70 temperature 20 14400 < th dose dependent rect. 22 4
126 250.85 temperature 20 14400 < th dose dependent rect. 23 2
136 250.89 radiation 10 43200 < th dose dependent rect. 18 13
160 251.09 wind 5 1440 < th dose dependent rect. 13 7
184 251.30 temperature 25 4320 < th dose dependent sin 1 NA
212 251.44 temperature 25 4320 > th dose independent rect. 8 13
220 251.46 temperature 20 4320 > th dose dependent rect. 5 1
238 251.56 temperature 25 4320 < th dose independent rect. 8 12
242 251.58 temperature 15 14400 > th dose dependent rect. 2 1
285 251.71 temperature 20 14400 < th dose dependent sin 12 NA
310 251.79 radiation 1 43200 > th dose dependent rect. 17 12
326 251.85 radiation 1 43200 > th dose dependent rect. 17 2
352 251.93 radiation 1 14400 > th dose independent rect. 9 4
391 252.05 temperature 25 4320 > th dose independent sin 0 NA
406 252.09 wind 9 43200 < th dose independent rect. 16 1
449 252.18 temperature 25 4320 < th dose independent sin 0 NA
457 252.19 wind 9 43200 < th dose independent rect. 14 4
468 252.20 atmosphere 1010 43200 > th dose independent rect. 1 1
486 252.23 wind 3 1440 > th dose independent sin 21 NA
510 252.27 temperature 25 14400 > th dose independent rect. 18 1
511 252.27 wind 9 43200 > th dose independent rect. 14 4
559 252.35 temperature 25 14400 < th dose independent rect. 18 1
574 252.36 wind 1 43200 < th dose dependent rect. 17 19
579 252.37 temperature 20 14400 < th dose independent rect. 18 13
592 252.39 radiation 10 43200 < th dose independent rect. 21 9
593 252.39 radiation 30 43200 < th dose independent rect. 16 10
618 252.42 radiation 30 43200 < th dose independent rect. 16 8
634 252.44 radiation 10 43200 < th dose independent rect. 24 6
644 252.44 radiation 10 43200 < th dose dependent rect. 21 10
658 252.45 radiation 10 43200 < th dose dependent rect. 4 3
659 252.45 radiation 10 43200 < th dose dependent rect. 1 6
660 252.45 radiation 10 43200 < th dose dependent rect. 23 8
662 252.46 radiation 10 43200 < th dose independent rect. 5 1
669 252.46 radiation 10 43200 < th dose independent rect. 18 13
682 252.47 radiation 30 43200 < th dose independent rect. 16 1
685 252.47 radiation 1 14400 < th dose independent rect. 9 4
711 252.51 radiation 30 43200 < th dose independent rect. 16 3
790 252.60 temperature 30 4320 < th dose dependent rect. 11 4
791 252.61 wind 3 1440 < th dose independent sin 21 NA
865 252.68 temperature 20 14400 > th dose independent rect. 18 13
925 252.74 temperature 30 4320 < th dose dependent rect. 11 6
954 252.77 atmosphere 1010 43200 < th dose independent rect. 1 1
979 252.79 temperature 20 14400 < th dose independent sin 10 NA
989 252.80 temperature 25 4320 > th dose independent rect. 15 4