BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0140900 Os03g0140900|Os03g0140900
(524 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G28690.1 | chr4:14159093-14160876 FORWARD LENGTH=449 111 1e-24
AT2G20310.1 | chr2:8761328-8763083 REVERSE LENGTH=431 104 2e-22
AT4G27660.1 | chr4:13817249-13818027 REVERSE LENGTH=183 96 5e-20
AT5G54150.1 | chr5:21977461-21978237 REVERSE LENGTH=161 89 4e-18
AT5G54148.1 | chr5:21976465-21977032 REVERSE LENGTH=117 78 1e-14
>AT4G28690.1 | chr4:14159093-14160876 FORWARD LENGTH=449
Length = 448
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 64/108 (59%), Gaps = 14/108 (12%)
Query: 110 IVSEKGEIACRDFPHPRHLCVSMPFTSS-HADHCAMCHCYVCDSPAPCAFW-GKGTEPTD 167
+V +KGE+ACRDFPHPRH C PF S+ H C MCHCYVCD+ APC +W G TD
Sbjct: 83 VVGQKGEVACRDFPHPRHACAKYPFKSTLHQTFCEMCHCYVCDTRAPCTYWFSGGISNTD 142
Query: 168 HCHATDKNAKWTKMRQSLKRKN-LPSSNRRGIKNHFQPISATASLQLQ 214
HCHA DK W R+ ++ N LP +P+S AS +LQ
Sbjct: 143 HCHANDKEKTWNDQRECIRTGNMLP-----------RPVSKPASAKLQ 179
>AT2G20310.1 | chr2:8761328-8763083 REVERSE LENGTH=431
Length = 430
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 113 EKGEIACRDFPHPRHLCVSMPFTS-SHADHCAMCHCYVCDSPAPCAFWGKGTEPTDHCHA 171
+KGEIACRDFPHPRH C F S SH +C MCHCYVCD APC +W DHCHA
Sbjct: 107 QKGEIACRDFPHPRHSCAKYAFNSTSHEKYCDMCHCYVCDIRAPCPYWCIAVSSIDHCHA 166
Query: 172 TDKNAKWTKMRQSLKRKNLPSS 193
DK W R+ + +P++
Sbjct: 167 NDKEKIWKNQREYFRTGYMPTA 188
>AT4G27660.1 | chr4:13817249-13818027 REVERSE LENGTH=183
Length = 182
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 46/90 (51%), Positives = 62/90 (68%), Gaps = 5/90 (5%)
Query: 108 LQIVSEKGEIACRDFPHPRHLCVSMPFTSS-HADHCAMCHCYVCDSPAPCAFWGKGTEPT 166
+ IV EKG++ACRDFPHPRHLC+ PF SS H+ HC C+CYVCD APCA+W + T
Sbjct: 92 VAIVHEKGQVACRDFPHPRHLCLKFPFESSQHSSHCNQCYCYVCDVVAPCAYWT-ASFAT 150
Query: 167 DHCHATDKNAKWTKMRQSLKRKNLPSSNRR 196
HC A + N+KW +R+ ++LP++ R
Sbjct: 151 PHCEALE-NSKWKPIRKLY--RDLPAAGLR 177
>AT5G54150.1 | chr5:21977461-21978237 REVERSE LENGTH=161
Length = 160
Score = 89.4 bits (220), Expect = 4e-18, Method: Composition-based stats.
Identities = 35/66 (53%), Positives = 51/66 (77%), Gaps = 6/66 (9%)
Query: 108 LQIVSEKGEIACRDFPHPRHLCVSMPF-TSSHADHCAMCHCYVCDSPAPCAFWGKGTEPT 166
L+I+ E G++ACRD+PHPRHLC++ PF ++S+A HC +C+C+VCD PAPCA W +
Sbjct: 80 LEIIHESGQVACRDYPHPRHLCLNFPFGSTSNATHCDLCYCHVCDKPAPCALW-----MS 134
Query: 167 DHCHAT 172
HC+A+
Sbjct: 135 SHCNAS 140
>AT5G54148.1 | chr5:21976465-21977032 REVERSE LENGTH=117
Length = 116
Score = 78.2 bits (191), Expect = 1e-14, Method: Composition-based stats.
Identities = 33/63 (52%), Positives = 43/63 (68%), Gaps = 5/63 (7%)
Query: 121 DFPHPRHLCVSMPFTSS-HADHCAMCHCYVCDSPAPCAFWGKGTEPTDHCHATDKNAKWT 179
D+PHPRH C++ PF S+ ++ HC +C+CYVCD PAPCA W T T HC+A D +A W
Sbjct: 57 DYPHPRHFCLNFPFGSTPNSSHCDLCYCYVCDKPAPCAEW---TISTSHCNAYD-SALWN 112
Query: 180 KMR 182
R
Sbjct: 113 LCR 115
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.128 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,262,980
Number of extensions: 401853
Number of successful extensions: 1079
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1073
Number of HSP's successfully gapped: 5
Length of query: 524
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 421
Effective length of database: 8,282,721
Effective search space: 3487025541
Effective search space used: 3487025541
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 114 (48.5 bits)