BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0465900 Os10g0465900|AK110879
(223 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0465900 PfkB domain containing protein 458 e-129
Os08g0566400 Ribokinase family protein 218 3e-57
>Os10g0465900 PfkB domain containing protein
Length = 223
Score = 458 bits (1179), Expect = e-129, Method: Compositional matrix adjust.
Identities = 223/223 (100%), Positives = 223/223 (100%)
Query: 1 MDIQMRWPWQLLSRNVQADQMKIPILVDAEPERTREELGGLLSLASYIVCNGKFPEKWTS 60
MDIQMRWPWQLLSRNVQADQMKIPILVDAEPERTREELGGLLSLASYIVCNGKFPEKWTS
Sbjct: 1 MDIQMRWPWQLLSRNVQADQMKIPILVDAEPERTREELGGLLSLASYIVCNGKFPEKWTS 60
Query: 61 VPSIPSALLEILLQYPRACFAVVTLGENGCMMLERGKDGENYETEPVDIENVAESLRLKV 120
VPSIPSALLEILLQYPRACFAVVTLGENGCMMLERGKDGENYETEPVDIENVAESLRLKV
Sbjct: 61 VPSIPSALLEILLQYPRACFAVVTLGENGCMMLERGKDGENYETEPVDIENVAESLRLKV 120
Query: 121 DKDDILPTCVSSKFMRLTARGSGNIFARLLIGTAESIPASELVDTTGCGDAFIGAVLHGL 180
DKDDILPTCVSSKFMRLTARGSGNIFARLLIGTAESIPASELVDTTGCGDAFIGAVLHGL
Sbjct: 121 DKDDILPTCVSSKFMRLTARGSGNIFARLLIGTAESIPASELVDTTGCGDAFIGAVLHGL 180
Query: 181 STEMPPEKMLPFACQVAGIKCRAIGARSGLPWQSDPRLTKYLC 223
STEMPPEKMLPFACQVAGIKCRAIGARSGLPWQSDPRLTKYLC
Sbjct: 181 STEMPPEKMLPFACQVAGIKCRAIGARSGLPWQSDPRLTKYLC 223
>Os08g0566400 Ribokinase family protein
Length = 398
Score = 218 bits (554), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 113/222 (50%), Positives = 152/222 (68%), Gaps = 6/222 (2%)
Query: 1 MDIQMRWPWQLLSRNVQADQMKIPILVDAEPERTREELGGLLSLASYIVCNGKFPEKWTS 60
D+++ L++ +A Q K+PIL+DAE R R+ L LL+ ASY+VC+ KFP+ WT
Sbjct: 182 FDVRLHETALLVAE--EASQRKLPILIDAE--RKRDGLDELLNFASYVVCSAKFPQAWTG 237
Query: 61 VPSIPSALLEILLQYPRACFAVVTLGENGCMMLERGKDGENYETEPVDIENVAESLRLKV 120
S P AL+ +LL+ P F +VTLGE GC+MLER + E E +D+E++ ESL K
Sbjct: 238 ASSTPVALVSMLLRLPNIKFIIVTLGEKGCLMLERSTT-DASEAEEIDVESLLESLEKKE 296
Query: 121 DKDDILPTCVSSKF-MRLTARGSGNIFARLLIGTAESIPASELVDTTGCGDAFIGAVLHG 179
+P C++SK +R++A G G+I RLL+GTAE IP+ EL+DTTG GDAFIGAVL+G
Sbjct: 297 VLSSSMPKCIASKSNLRISADGIGSISGRLLLGTAEIIPSEELIDTTGAGDAFIGAVLYG 356
Query: 180 LSTEMPPEKMLPFACQVAGIKCRAIGARSGLPWQSDPRLTKY 221
L + MPPEKMLPFA QVA CR +GAR+ LP ++DPRL Y
Sbjct: 357 LCSGMPPEKMLPFAAQVAACGCRGLGARTALPHRTDPRLVAY 398
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.137 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,061,830
Number of extensions: 332677
Number of successful extensions: 673
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 670
Number of HSP's successfully gapped: 2
Length of query: 223
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 126
Effective length of database: 11,971,043
Effective search space: 1508351418
Effective search space used: 1508351418
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)