Os08g0566400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ribokinase family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os08g0566400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Ribokinase family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.18 | 0.346 | 11.9 | -0.894 | 0.976 | 0.72 | 0.0102 | 3.52 | -0.215 | 23.9 | 1.04 | 7189 | -- | -- |
| 61.76 | 0.366 | 12 | -1.38 | 0.95 | 0.462 | 0.0178 | -- | -0.374 | 24 | 41.28 | 18454 | -- | -- |
| 53.62 | 0.341 | 11.9 | -0.895 | 0.977 | 0.723 | -- | 3.46 | -0.212 | 23.9 | 1.04 | 10041 | -- | -- |
| 61.31 | 0.365 | 12 | -1.43 | 0.988 | 0.501 | -- | -- | -0.416 | 23.9 | 42.43 | 18832 | -- | -- |
| 81.97 | 0.424 | 11.9 | -1.52 | -- | -0.676 | -- | 0.149 | -0.22 | -- | 1.34 | 12660 | -- | -- |
| 68.39 | 0.388 | 11.9 | -1.55 | 1.02 | -- | 0.155 | -- | -0.254 | 24 | -- | -- | -- | -- |
| 68.5 | 0.388 | 11.9 | -1.56 | 1.01 | -- | -- | -- | -0.255 | 24 | -- | -- | -- | -- |
| 82.12 | 0.424 | 11.9 | -1.52 | -- | -0.675 | -- | -- | -0.221 | -- | 1.34 | 12660 | -- | -- |
| 95.27 | 0.455 | 11.9 | -- | 1.02 | 1.08 | -- | -- | 0.0721 | 0.314 | 58.79 | 28064 | -- | -- |
| 133.34 | 0.54 | 11.9 | -1.53 | -- | -- | -- | -- | -0.241 | -- | -- | -- | -- | -- |
| 132.53 | 0.539 | 11.9 | -- | 0.995 | -- | -- | -- | -0.0812 | 23.9 | -- | -- | -- | -- |
| 139.64 | 0.552 | 11.9 | -- | -- | -0.71 | -- | -- | -0.0318 | -- | 0.01678 | 46381 | -- | -- |
| 194.88 | 0.652 | 11.9 | -- | -- | -- | -- | -- | -0.0714 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.61 | radiation | 1 | 14400 | < th | dose independent | rect. | 16 | 7 |
| 3 | 53.62 | radiation | 1 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 13 | 53.65 | radiation | 10 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 25 | 53.78 | radiation | 1 | 14400 | < th | dose independent | rect. | 8 | 11 |
| 47 | 53.80 | radiation | 1 | 14400 | > th | dose independent | rect. | 8 | 11 |
| 57 | 53.80 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 6 |
| 94 | 53.85 | radiation | 1 | 14400 | < th | dose independent | rect. | 16 | 20 |
| 104 | 53.86 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 107 | 53.87 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 13 |
| 110 | 53.88 | radiation | 1 | 14400 | < th | dose independent | sin | 19 | NA |
| 156 | 53.94 | radiation | 1 | 14400 | > th | dose independent | rect. | 16 | 20 |
| 158 | 53.95 | radiation | 1 | 14400 | > th | dose independent | sin | 19 | NA |
| 262 | 54.03 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 5 |
| 301 | 54.06 | radiation | 1 | 14400 | < th | dose independent | no | NA | NA |
| 384 | 54.08 | radiation | 1 | 14400 | < th | dose dependent | rect. | 16 | 7 |
| 385 | 54.08 | radiation | 1 | 4320 | < th | dose dependent | rect. | 15 | 15 |
| 386 | 54.08 | radiation | 1 | 14400 | < th | dose dependent | rect. | 16 | 20 |
| 390 | 54.09 | radiation | 1 | 14400 | < th | dose dependent | rect. | 16 | 3 |
| 395 | 54.09 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 12 |
| 461 | 54.13 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 13 |
| 463 | 54.14 | radiation | 1 | 14400 | > th | dose independent | no | NA | NA |
| 564 | 54.18 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 2 |
| 579 | 54.19 | radiation | 1 | 14400 | < th | dose dependent | rect. | 8 | 11 |
| 580 | 54.19 | radiation | 1 | 14400 | < th | dose dependent | rect. | 8 | 15 |
| 592 | 54.20 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 14 |
| 611 | 54.21 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 5 |
| 669 | 54.23 | radiation | 1 | 14400 | < th | dose dependent | sin | 20 | NA |
| 696 | 54.24 | radiation | 1 | 14400 | < th | dose dependent | rect. | 7 | 23 |
| 704 | 54.25 | radiation | 1 | 14400 | < th | dose dependent | rect. | 22 | 21 |
| 714 | 54.26 | radiation | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 739 | 54.27 | radiation | 1 | 14400 | < th | dose dependent | rect. | 11 | 23 |
| 884 | 54.39 | wind | 1 | 14400 | > th | dose independent | rect. | 10 | 14 |
| 979 | 54.52 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 16 |