BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0566400 Os08g0566400|AK067804
         (398 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G28706.4  | chr4:14167805-14172254 FORWARD LENGTH=441          432   e-121
AT5G43910.2  | chr5:17667537-17670085 REVERSE LENGTH=366          347   7e-96

>AT4G28706.4 | chr4:14167805-14172254 FORWARD LENGTH=441
          Length = 440

 Score =  432 bits (1111), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 209/354 (59%), Positives = 258/354 (72%), Gaps = 2/354 (0%)

Query: 46  VVLGCGAVSADYLATVASFPNPDDKIRSLTLKVQXXXXXXXXXXXXXXXXXXPRIISKVS 105
           +VLGCG ++ D+LATV S+P  DDKIRS +LKVQ                   R+ISKV+
Sbjct: 50  IVLGCGGIAVDFLATVDSYPQADDKIRSTSLKVQGGGNAANALTCAARLGLNSRLISKVA 109

Query: 106 NDPQGRNILKELQDDGVDTSHILVAEEGNSPFTYIIVDNQTKTRTCIHTPGYPPMVPEEL 165
           ND QG+ +L+EL+ DGVDTS I+V++EGNSPFTYI+VDNQTKTRTCIHTPG PPM+P +L
Sbjct: 110 NDSQGKGMLEELEADGVDTSFIVVSKEGNSPFTYILVDNQTKTRTCIHTPGDPPMLPTDL 169

Query: 166 TQENLFAALDGADIVYFDVRLHETALLVAEEASQRKLPILIDAERKRDGLDELLNFASYV 225
           +Q ++ +ALD A IVYFDVRLHETAL++A+EAS++K+PIL+D E+KRDGLD+LL FA YV
Sbjct: 170 SQSSMLSALDRASIVYFDVRLHETALVIAKEASRKKIPILVDTEKKRDGLDDLLPFADYV 229

Query: 226 VCSAKFPQAWTGASSTPVALVSMLLRLPNIKFIIVTLGEKGCLMLER-STTDASEAEEID 284
           VC   FPQ WT  SSTP ALVSMLLRLP +KF+IVT GE GCLM++R S  +  E++E D
Sbjct: 230 VCPENFPQTWTEVSSTPGALVSMLLRLPKLKFVIVTSGEHGCLMVQRASKAEVFESQETD 289

Query: 285 XXXXXXXXXXXXXXXXXMPKCIASKSNLRISADXXXXXXXXXXXXTAEIIPSEELIDTTG 344
                             P C++S++  ++ A+            TAE IP EEL+DTTG
Sbjct: 290 IESLLETLKHRKDSTTTFPTCVSSETT-KLKANGVGTMTGRLFLGTAEKIPPEELVDTTG 348

Query: 345 AGDAFIGAVLYGLCSGMPPEKMLPFAAQVAACGCRGLGARTALPHRTDPRLVAY 398
           AGDAFIGAVLY +C+GMPPEKMLPFAAQVA C CR LGART LPHRTDPRLV +
Sbjct: 349 AGDAFIGAVLYAICAGMPPEKMLPFAAQVAGCSCRALGARTGLPHRTDPRLVPF 402



>AT5G43910.2 | chr5:17667537-17670085 REVERSE LENGTH=366
          Length = 365

 Score =  347 bits (890), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 178/354 (50%), Positives = 234/354 (66%), Gaps = 6/354 (1%)

Query: 46  VVLGCGAVSADYLATVASFPNPDDKIRSLTLKVQXXXXXXXXXXXXXXXXXXPRIISKVS 105
           +VLGCG +  DYL TVASFP PD KIR  + KVQ                   RI++KV+
Sbjct: 14  IVLGCGQLCLDYLVTVASFPIPDQKIRGTSFKVQGGGNTGNALTCVARLGLPCRILAKVA 73

Query: 106 NDPQGRNILKELQDDGVDTSHILVAEEGNSPFTYIIVDNQTKTRTCIHTPGYPPMVPEEL 165
           +D  GR +++EL+  GVDTS  + A++G S F Y+IVDNQT TRTCI+TPGYPP++P++L
Sbjct: 74  DDSHGRYMVEELESSGVDTSFCMSAKDGASHFNYVIVDNQTNTRTCIYTPGYPPLLPDDL 133

Query: 166 TQENLFAALDGADIVYFDVRLHETALLVAEEASQRKLPILIDAERKRDGLDELLNFASYV 225
           T+  L   LDG  ++Y + R  E  LL+A++A  + +PILI+AE+KR GLDEL++ A Y 
Sbjct: 134 TESLLLDVLDGVRVLYVNGRSREAELLLAQKAHSKNIPILINAEKKRTGLDELIDLADYA 193

Query: 226 VCSAKFPQAWTGASSTPVALVSMLLRLPNIKFIIVTLGEKGCLMLER-STTDASEAEEID 284
           +CS  FPQ WTGA S+P AL+SML+RLP +KF+I+TLGE GC+MLER S+  +   EE D
Sbjct: 194 ICSTNFPQEWTGAPSSPSALLSMLIRLPKLKFVIMTLGEHGCVMLERCSSEVSGSEEETD 253

Query: 285 XXXXXXXXXXXXXXXXXMPKCIASKSNLRISADXXXXXXXXXXXXTAEIIPSEELIDTTG 344
                            +P C +S    R++ +            TAE IPS ELIDTTG
Sbjct: 254 IDELHESLKQSTDFTSVLPVCNSSLVT-RLTGN----VTGRLVIVTAEKIPSSELIDTTG 308

Query: 345 AGDAFIGAVLYGLCSGMPPEKMLPFAAQVAACGCRGLGARTALPHRTDPRLVAY 398
           AGDAF GA+LYGLC+GM  E+ML FA++VAAC CRGLGART+LP+RTDP L  +
Sbjct: 309 AGDAFTGALLYGLCTGMALEEMLTFASRVAACCCRGLGARTSLPYRTDPNLATF 362



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,614,613
Number of extensions: 230326
Number of successful extensions: 492
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 488
Number of HSP's successfully gapped: 2
Length of query: 398
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 297
Effective length of database: 8,337,553
Effective search space: 2476253241
Effective search space used: 2476253241
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)