BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0447300 Os10g0447300|Os10g0447300
         (155 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0447300  Peptidase A1, pepsin family protein                 274   2e-74
Os01g0178600  Peptidase A1, pepsin family protein                 180   3e-46
Os07g0526300                                                      171   2e-43
Os01g0843400                                                      134   3e-32

>Os10g0447300 Peptidase A1, pepsin family protein
          Length = 155

 Score =  274 bits (700), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 138/155 (89%), Positives = 138/155 (89%)

Query: 1   MGSVKFGCSTATGRLVPGRQAEILLQSYCLVPHSVNTSSALNFGALANVTEPGAASTPXX 60
           MGSVKFGCSTATGRLVPGRQAEILLQSYCLVPHSVNTSSALNFGALANVTEPGAASTP  
Sbjct: 1   MGSVKFGCSTATGRLVPGRQAEILLQSYCLVPHSVNTSSALNFGALANVTEPGAASTPLV 60

Query: 61  XXXXXXXXXXXXXXXKVGNKTVASAASSRIIVDSGTTLTFLDPALMGPLVDELSRWITLP 120
                          KVGNKTVASAASSRIIVDSGTTLTFLDPALMGPLVDELSRWITLP
Sbjct: 61  VGDVDTYYTVVLDSVKVGNKTVASAASSRIIVDSGTTLTFLDPALMGPLVDELSRWITLP 120

Query: 121 PVQSPDGLLQLCYEVAGQEEVNRTGESGLDAGVRT 155
           PVQSPDGLLQLCYEVAGQEEVNRTGESGLDAGVRT
Sbjct: 121 PVQSPDGLLQLCYEVAGQEEVNRTGESGLDAGVRT 155



>Os01g0178600 Peptidase A1, pepsin family protein
          Length = 454

 Score =  180 bits (457), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 100/158 (63%), Positives = 108/158 (68%), Gaps = 19/158 (12%)

Query: 1   MGSVKFGCSTATGRLVPGRQA--------EILLQ-----------SYCLVPHSVNTSSAL 41
           +G VKFGCSTAT    P             ++ Q           SYCLVPHSVN SSAL
Sbjct: 215 VGGVKFGCSTATAGSFPADGLVGLGGGAVSLVTQLGGATSLGRRFSYCLVPHSVNASSAL 274

Query: 42  NFGALANVTEPGAASTPXXXXXXXXXXXXXXXXXKVGNKTVASAASSRIIVDSGTTLTFL 101
           NFGALA+VTEPGAASTP                 KVGNKTVASAASSRIIVDSGTTLTFL
Sbjct: 275 NFGALADVTEPGAASTPLVAGDVDTYYTVVLDSVKVGNKTVASAASSRIIVDSGTTLTFL 334

Query: 102 DPALMGPLVDELSRWITLPPVQSPDGLLQLCYEVAGQE 139
           DP+L+GP+VDELSR ITLPPVQSPDGLLQLCY VAG+E
Sbjct: 335 DPSLLGPIVDELSRRITLPPVQSPDGLLQLCYNVAGRE 372



>Os07g0526300 
          Length = 251

 Score =  171 bits (432), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 86/113 (76%), Positives = 91/113 (80%)

Query: 27  SYCLVPHSVNTSSALNFGALANVTEPGAASTPXXXXXXXXXXXXXXXXXKVGNKTVASAA 86
           SYCLVPHSVNTSS LNFGALAN+TEPG A+T                  KVGNKTVASAA
Sbjct: 72  SYCLVPHSVNTSSVLNFGALANITEPGVATTQLVAGDVDTYYTVVLDSVKVGNKTVASAA 131

Query: 87  SSRIIVDSGTTLTFLDPALMGPLVDELSRWITLPPVQSPDGLLQLCYEVAGQE 139
           SSRIIVDSGT LTFLDPALMGPL+DELSR ITLPP+QSPDGLLQLCYEVAG+E
Sbjct: 132 SSRIIVDSGTMLTFLDPALMGPLIDELSRRITLPPMQSPDGLLQLCYEVAGRE 184



>Os01g0843400 
          Length = 216

 Score =  134 bits (336), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 70/89 (78%), Positives = 70/89 (78%)

Query: 27  SYCLVPHSVNTSSALNFGALANVTEPGAASTPXXXXXXXXXXXXXXXXXKVGNKTVASAA 86
           SYCLVPHSVNTSSALNFGALANVTEPGAASTP                 KVGNKTVASAA
Sbjct: 14  SYCLVPHSVNTSSALNFGALANVTEPGAASTPLVAGDVDTYYTVVLDSVKVGNKTVASAA 73

Query: 87  SSRIIVDSGTTLTFLDPALMGPLVDELSR 115
           S RIIVDSGTTLTFLD ALMGPLVDELSR
Sbjct: 74  SLRIIVDSGTTLTFLDTALMGPLVDELSR 102



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.131    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,528,020
Number of extensions: 147701
Number of successful extensions: 422
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 417
Number of HSP's successfully gapped: 4
Length of query: 155
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 63
Effective length of database: 12,232,113
Effective search space: 770623119
Effective search space used: 770623119
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 151 (62.8 bits)