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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0447300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase A1, pepsin family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.93 (0.0386) R2 : 5.03e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0123 (0.0813) R2dN8 : 6.5e-05 R2N8 : 5.03e-05
σ : 0.727
deviance : 242.55
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
226.89 0.708 2.92 0.35 0.0837 0.897 0.728 1.55 0.0993 9.58 1015 4307 -- --
228.19 0.704 2.89 0.532 0.0764 0.575 0.718 -- 0.155 8.79 1011 3894 -- --
228.85 0.705 2.92 0.38 0.0791 0.899 -- 1.55 0.0986 9.72 1015 4338 -- --
229.75 0.706 2.89 0.549 0.0747 0.56 -- -- 0.152 9.35 1011 3955 -- --
229.23 0.705 2.92 0.383 -- 0.886 -- 1.52 0.101 -- 1015 4344 -- --
235.66 0.72 2.92 0.41 0.0728 -- 0.651 -- 0.0593 9.78 -- -- -- --
237.26 0.721 2.92 0.436 0.0703 -- -- -- 0.0609 10.7 -- -- -- --
230.08 0.706 2.9 0.548 -- 0.559 -- -- 0.152 -- 1011 3950 -- --
236.4 0.716 2.91 -- 0.0677 0.597 -- -- 0.0634 9.47 1013 3812 -- --
237.57 0.72 2.92 0.435 -- -- -- -- 0.0605 -- -- -- -- --
242.27 0.728 2.93 -- 0.0676 -- -- -- 0.0123 10.2 -- -- -- --
236.68 0.717 2.92 -- -- 0.601 -- -- 0.0642 -- 1014 3807 -- --
242.55 0.727 2.93 -- -- -- -- -- 0.0123 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 222.14 atmosphere 1015.0 30 < th dose independent rect. 3 23
2 222.28 atmosphere 1000.0 90 < th dose independent rect. 7 4
13 224.01 atmosphere 1000.0 10 < th dose independent rect. 7 5
26 224.53 precipitation 0.1 4320 > th dose dependent rect. 20 1
33 224.79 atmosphere 1000.0 10 < th dose independent rect. 1 11
43 225.01 atmosphere 1000.0 270 < th dose independent rect. 6 1
51 225.06 temperature 10.0 30 > th dose dependent rect. 3 23
90 225.38 atmosphere 1010.0 1440 > th dose independent rect. 24 1
91 225.39 radiation 1.0 43200 < th dose dependent rect. 3 1
92 225.40 precipitation 0.1 4320 > th dose independent rect. 20 1
93 225.42 atmosphere 1010.0 1440 < th dose independent rect. 1 1
97 225.45 precipitation 0.1 4320 < th dose independent rect. 20 1
98 225.45 precipitation 0.1 4320 < th dose dependent rect. 20 1
101 225.56 atmosphere 1000.0 90 < th dose dependent rect. 7 4
103 225.58 humidity 60.0 90 < th dose dependent rect. 9 1
120 225.62 atmosphere 1000.0 90 < th dose dependent rect. 9 1
148 225.90 atmosphere 1010.0 4320 > th dose dependent rect. 15 1
150 225.94 humidity 60.0 90 < th dose independent rect. 9 1
177 226.13 wind 3.0 1440 < th dose independent rect. 2 2
180 226.15 radiation 10.0 90 < th dose independent rect. 8 1
188 226.18 radiation 30.0 720 < th dose dependent rect. 17 8
190 226.23 atmosphere 1015.0 4320 > th dose dependent rect. 1 1
192 226.24 atmosphere 1015.0 4320 > th dose independent rect. 12 14
193 226.24 atmosphere 1015.0 4320 > th dose dependent rect. 11 15
194 226.25 wind 3.0 1440 > th dose independent rect. 1 4
195 226.25 wind 3.0 1440 < th dose independent rect. 1 4
198 226.26 wind 3.0 1440 > th dose independent rect. 2 2
205 226.28 atmosphere 1015.0 4320 < th dose independent rect. 13 13
207 226.28 atmosphere 1015.0 4320 > th dose dependent rect. 23 3
228 226.32 atmosphere 1015.0 4320 < th dose independent rect. 16 10
270 226.37 atmosphere 1015.0 4320 > th dose dependent sin 17 NA
303 226.41 atmosphere 1015.0 4320 > th dose dependent rect. 9 17
337 226.45 atmosphere 1015.0 4320 > th dose independent sin 16 NA
344 226.45 atmosphere 1015.0 4320 > th dose dependent rect. 16 11
345 226.46 atmosphere 1015.0 4320 < th dose independent sin 16 NA
347 226.46 atmosphere 1015.0 4320 < th dose independent rect. 21 2
392 226.49 atmosphere 1015.0 4320 > th dose independent rect. 21 2
395 226.49 atmosphere 1015.0 4320 > th dose independent rect. 19 4
663 226.72 radiation 10.0 4320 < th dose independent rect. 11 19
712 226.75 wind 5.0 1440 > th dose dependent rect. 1 6
734 226.77 atmosphere 1010.0 720 > th dose independent rect. 11 4
745 226.78 radiation 10.0 720 < th dose independent rect. 16 8
799 226.81 wind 5.0 1440 < th dose dependent rect. 2 1
822 226.83 atmosphere 1010.0 1440 > th dose independent rect. 10 6
841 226.84 radiation 10.0 4320 < th dose independent rect. 11 7
843 226.84 radiation 10.0 4320 < th dose independent rect. 11 12
914 226.86 atmosphere 1015.0 4320 > th dose dependent rect. 15 19
989 226.89 atmosphere 1015.0 4320 > th dose dependent no NA NA
990 226.89 wind 9.0 1440 < th dose dependent rect. 2 1