BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0447300 Os10g0447300|Os10g0447300
         (155 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G64830.1  | chr1:24091271-24092566 REVERSE LENGTH=432           55   1e-08
AT5G33340.1  | chr5:12594474-12595787 FORWARD LENGTH=438           51   3e-07

>AT1G64830.1 | chr1:24091271-24092566 REVERSE LENGTH=432
          Length = 431

 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 53/123 (43%), Gaps = 8/123 (6%)

Query: 27  SYCLVPHSVNT--SSALNFGALANVTEPGAASTPXXXXXXXXXXXXXXXXXKVGNK---- 80
           SYCLVP +  T  +S +NFG    V+  G  ST                   VG+K    
Sbjct: 239 SYCLVPFTSETGLTSKINFGTNGIVSGDGVVSTSMVKKDPATYYFLNLEAISVGSKKIQF 298

Query: 81  --TVASAASSRIIVDSGTTLTFLDPALMGPLVDELSRWITLPPVQSPDGLLQLCYEVAGQ 138
             T+       I++DSGTTLT L       L   ++  I    VQ PDG+L LCY  +  
Sbjct: 299 TSTIFGTGEGNIVIDSGTTLTLLPSNFYYELESVVASTIKAERVQDPDGILSLCYRDSSS 358

Query: 139 EEV 141
            +V
Sbjct: 359 FKV 361



>AT5G33340.1 | chr5:12594474-12595787 FORWARD LENGTH=438
          Length = 437

 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 53/124 (42%), Gaps = 9/124 (7%)

Query: 27  SYCLVP--HSVNTSSALNFGALANVTEPGAASTPXXXXXXXXXXXXXX-XXXKVGNKTV- 82
           SYCLVP     + +S +NFG  A V+  G  STP                   VG+K + 
Sbjct: 244 SYCLVPLTSKKDQTSKINFGTNAIVSGSGVVSTPLIAKASQETFYYLTLKSISVGSKQIQ 303

Query: 83  -----ASAASSRIIVDSGTTLTFLDPALMGPLVDELSRWITLPPVQSPDGLLQLCYEVAG 137
                + ++   II+DSGTTLT L       L D ++  I     Q P   L LCY   G
Sbjct: 304 YSGSDSESSEGNIIIDSGTTLTLLPTEFYSELEDAVASSIDAEKKQDPQSGLSLCYSATG 363

Query: 138 QEEV 141
             +V
Sbjct: 364 DLKV 367



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.131    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,760,901
Number of extensions: 87013
Number of successful extensions: 165
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 2
Length of query: 155
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 65
Effective length of database: 8,639,129
Effective search space: 561543385
Effective search space used: 561543385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 107 (45.8 bits)