Os01g0178600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase A1, pepsin family protein.
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Os01g0178600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase A1, pepsin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 212.93 | 0.686 | 5.71 | 0.0877 | 0.835 | -0.743 | -0.309 | -0.527 | -0.273 | 5.19 | 22.23 | 837 | -- | -- |
| 213.67 | 0.681 | 5.7 | 0.257 | 0.813 | -0.737 | -0.226 | -- | -0.234 | 5.19 | 22.2 | 764 | -- | -- |
| 213.16 | 0.68 | 5.71 | 0.095 | 0.836 | -0.743 | -- | -0.502 | -0.27 | 5.19 | 22.22 | 844 | -- | -- |
| 213.8 | 0.681 | 5.69 | 0.256 | 0.811 | -0.737 | -- | -- | -0.233 | 5.23 | 22.22 | 764 | -- | -- |
| 245.49 | 0.73 | 5.71 | 0.215 | -- | -0.814 | -- | -0.306 | -0.221 | -- | 22.1 | 587 | -- | -- |
| 238.07 | 0.723 | 5.75 | 0.0183 | 0.872 | -- | -0.16 | -- | -0.481 | 5.83 | -- | -- | -- | -- |
| 238.13 | 0.723 | 5.75 | 0.0173 | 0.871 | -- | -- | -- | -0.481 | 5.84 | -- | -- | -- | -- |
| 245.81 | 0.73 | 5.7 | 0.31 | -- | -0.81 | -- | -- | -0.199 | -- | 22.1 | 574 | -- | -- |
| 215.44 | 0.684 | 5.7 | -- | 0.816 | -0.703 | -- | -- | -0.265 | 5.24 | 22.2 | 763 | -- | -- |
| 277.48 | 0.778 | 5.76 | 0.0439 | -- | -- | -- | -- | -0.46 | -- | -- | -- | -- | -- |
| 238.14 | 0.722 | 5.75 | -- | 0.872 | -- | -- | -- | -0.483 | 5.84 | -- | -- | -- | -- |
| 248.2 | 0.734 | 5.71 | -- | -- | -0.757 | -- | -- | -0.248 | -- | 22.03 | 571 | -- | -- |
| 277.54 | 0.778 | 5.76 | -- | -- | -- | -- | -- | -0.465 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 199.39 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 19 |
| 7 | 201.57 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 14 |
| 12 | 202.14 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 18 |
| 14 | 202.16 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 11 |
| 19 | 202.66 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 20 | 203.31 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 21 |
| 33 | 204.62 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 20 |
| 34 | 204.83 | temperature | 10 | 90 | > th | dose dependent | rect. | 4 | 23 |
| 38 | 204.92 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 16 |
| 56 | 205.53 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 14 |
| 68 | 205.76 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 11 |
| 86 | 206.45 | temperature | 10 | 270 | > th | dose dependent | sin | 6 | NA |
| 89 | 206.65 | temperature | 10 | 10 | > th | dose dependent | sin | 3 | NA |
| 101 | 206.80 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 102 | 206.80 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 20 |
| 109 | 206.97 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 4 |
| 121 | 207.21 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 9 |
| 144 | 207.52 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 3 |
| 150 | 207.58 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 11 |
| 175 | 207.74 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 180 | 207.81 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 191 | 207.99 | temperature | 30 | 10 | < th | dose dependent | sin | 4 | NA |
| 206 | 208.18 | temperature | 30 | 270 | < th | dose dependent | sin | 6 | NA |
| 216 | 208.33 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 227 | 208.52 | temperature | 25 | 270 | < th | dose independent | rect. | 24 | 13 |
| 248 | 208.76 | temperature | 25 | 270 | < th | dose independent | rect. | 24 | 17 |
| 278 | 209.08 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 291 | 209.19 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 21 |
| 319 | 209.42 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 20 |
| 337 | 209.59 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 358 | 209.93 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 7 |
| 386 | 210.32 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 409 | 210.49 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 8 |
| 513 | 211.23 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 550 | 211.43 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 1 |
| 586 | 211.63 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 3 |
| 634 | 211.92 | temperature | 25 | 30 | < th | dose independent | rect. | 3 | 11 |
| 647 | 212.01 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 653 | 212.05 | temperature | 20 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 662 | 212.09 | temperature | 25 | 90 | > th | dose independent | rect. | 1 | 15 |
| 671 | 212.13 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 15 |
| 674 | 212.15 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 19 |
| 686 | 212.22 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 21 |
| 720 | 212.45 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 736 | 212.55 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 11 |
| 742 | 212.57 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 747 | 212.60 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 748 | 212.61 | temperature | 15 | 30 | > th | dose dependent | rect. | 6 | 18 |
| 804 | 212.90 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 19 |
| 829 | 213.00 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 958 | 213.58 | temperature | 25 | 30 | < th | dose independent | rect. | 3 | 9 |
| 985 | 213.65 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 999 | 213.70 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |