BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0444100 Os10g0444100|AK071645
(274 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0444100 Homeodomain-like containing protein 531 e-151
Os10g0443800 Homeodomain-like containing protein 164 6e-41
Os02g0776700 Similar to Single myb histone 6 67 1e-11
>Os10g0444100 Homeodomain-like containing protein
Length = 274
Score = 531 bits (1367), Expect = e-151, Method: Compositional matrix adjust.
Identities = 258/274 (94%), Positives = 258/274 (94%)
Query: 1 MEKAVAAACGWRKGLEEGEPEWEAMELEAAAPAIFPADGGGGGVRRSPAASTIFXXXXXX 60
MEKAVAAACGWRKGLEEGEPEWEAMELEAAAPAIFPADGGGGGVRRSPAASTIF
Sbjct: 1 MEKAVAAACGWRKGLEEGEPEWEAMELEAAAPAIFPADGGGGGVRRSPAASTIFLPDLLD 60
Query: 61 XXXXXXXXXXQMEDIFQPAHEDDIHHLLQGPQDEADLDKWLAGQSCSPAAEGSITVQTPT 120
QMEDIFQPAHEDDIHHLLQGPQDEADLDKWLAGQSCSPAAEGSITVQTPT
Sbjct: 61 GSFLSDDDLSQMEDIFQPAHEDDIHHLLQGPQDEADLDKWLAGQSCSPAAEGSITVQTPT 120
Query: 121 YPILNLIDFIPKDGCKRGPRGARKRQTFPSRGARTRRAFPLQQLCFGTTRDKRCRLRKNN 180
YPILNLIDFIPKDGCKRGPRGARKRQTFPSRGARTRRAFPLQQLCFGTTRDKRCRLRKNN
Sbjct: 121 YPILNLIDFIPKDGCKRGPRGARKRQTFPSRGARTRRAFPLQQLCFGTTRDKRCRLRKNN 180
Query: 181 DHWTIKEVKNLVQGVSKHGVGRWTELKRDFFSTSIRTSVHLKDKWRNLLKACGIDFTSTA 240
DHWTIKEVKNLVQGVSKHGVGRWTELKRDFFSTSIRTSVHLKDKWRNLLKACGIDFTSTA
Sbjct: 181 DHWTIKEVKNLVQGVSKHGVGRWTELKRDFFSTSIRTSVHLKDKWRNLLKACGIDFTSTA 240
Query: 241 KGKAQKTMLWPLDKRLTEQIIQLAYKHPYPRQKY 274
KGKAQKTMLWPLDKRLTEQIIQLAYKHPYPRQKY
Sbjct: 241 KGKAQKTMLWPLDKRLTEQIIQLAYKHPYPRQKY 274
>Os10g0443800 Homeodomain-like containing protein
Length = 121
Score = 164 bits (415), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 79/110 (71%), Positives = 88/110 (80%)
Query: 164 LCFGTTRDKRCRLRKNNDHWTIKEVKNLVQGVSKHGVGRWTELKRDFFSTSIRTSVHLKD 223
L FGTT +R LRKNN+HWT KE+ LV+GVSKHGVG WT+LKRDFFSTSIRT+VHLKD
Sbjct: 10 LRFGTTTIRRHHLRKNNEHWTFKEITELVKGVSKHGVGSWTKLKRDFFSTSIRTAVHLKD 69
Query: 224 KWRNLLKACGIDFTSTAKGKAQKTMLWPLDKRLTEQIIQLAYKHPYPRQK 273
KWRNLLKACGI FTS K K QKTM+ LD L E+I LA KHPYPR+K
Sbjct: 70 KWRNLLKACGIKFTSKRKVKVQKTMILSLDMELVEEIKHLASKHPYPRRK 119
>Os02g0776700 Similar to Single myb histone 6
Length = 621
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Query: 172 KRCRLRKNNDHWTIKEVKNLVQGVSKHGVGRWTELKRDFFST-SIRTSVHLKDKWRNLLK 230
KR RK++ WT+ EV LV GV+++G G+W+E++R FS+ S RTSV LKDKWRNL++
Sbjct: 494 KRGGKRKHHRAWTLCEVVKLVDGVARYGAGKWSEIRRLAFSSYSYRTSVDLKDKWRNLIR 553
Query: 231 ACGIDFTSTAKG 242
A ++ G
Sbjct: 554 ASQTQLSTENDG 565
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,332,430
Number of extensions: 449513
Number of successful extensions: 1944
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1947
Number of HSP's successfully gapped: 3
Length of query: 274
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 175
Effective length of database: 11,866,615
Effective search space: 2076657625
Effective search space used: 2076657625
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)