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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0444100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Homeodomain-like containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.61 (0.0345) R2 : 0.871
β1 : -4.69 (0.152) R2dD : 0.451 R2D : 0.42
β2 : 1.95 (0.0776) R2dC : 0.173 R2C : 0.112
β3 : 1.28 (0.148) R2dE : 0.0458 R2E : 0.173
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.49 (0.0846) R2dN8 : 0.169 R2N8 : 0.0841
σ : 0.611
deviance : 172.28
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_____
C
peak time of C : 23.4
E
wheather : radiation
threshold : 2.311
memory length : 32299
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
163.86 0.601 6.83 -6.4 1.79 2.71 -0.82 8.48 -1.91 23.5 0.1364 4370 -- --
175.85 0.618 6.64 -4.87 1.91 1.07 -1.13 -- -1.63 23.1 1.816 30899 -- --
165.61 0.599 6.83 -6.38 1.98 2.68 -- 8.41 -1.91 23.6 0.1274 4315 -- --
172.28 0.611 6.61 -4.69 1.95 1.28 -- -- -1.49 23.4 2.311 32299 -- --
222.52 0.699 6.6 -5.32 -- 1.41 -- -0.715 -1.76 -- 0.1732 4540 -- --
210.32 0.68 6.66 -5.48 1.9 -- -0.505 -- -1.84 23.5 -- -- -- --
211.42 0.681 6.66 -5.46 1.9 -- -- -- -1.84 23.5 -- -- -- --
220.53 0.695 6.6 -5.4 -- 1.43 -- -- -1.78 -- 2.631 37809 -- --
295.24 0.8 6.27 -- 1.97 4.14 -- -- -0.097 23.5 0.0001921 47520 -- --
439.02 0.979 6.61 -5.41 -- -- -- -- -1.82 -- -- -- -- --
997.51 1.48 6.52 -- 1.85 -- -- -- -1.23 23.3 -- -- -- --
517.38 1.06 6.28 -- -- 4.24 -- -- -0.148 -- 0.004965 45000 -- --
1211.02 1.62 6.48 -- -- -- -- -- -1.22 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 159.09 radiation 20 43200 > th dose dependent rect. 16 15
2 159.55 radiation 30 43200 > th dose dependent rect. 15 17
3 160.15 radiation 20 43200 > th dose dependent rect. 16 1
33 160.92 humidity 90 43200 > th dose dependent rect. 2 1
39 161.69 radiation 20 43200 < th dose dependent rect. 17 13
44 161.81 radiation 1 43200 > th dose dependent rect. 17 12
46 161.82 radiation 30 43200 > th dose independent rect. 16 16
47 161.86 radiation 1 43200 > th dose dependent rect. 17 2
60 162.06 radiation 1 43200 < th dose dependent rect. 19 16
63 162.08 radiation 1 43200 < th dose dependent rect. 23 12
83 162.15 radiation 1 43200 < th dose dependent rect. 4 7
98 162.36 radiation 40 43200 < th dose dependent rect. 17 2
113 162.40 radiation 20 43200 < th dose dependent rect. 17 8
152 162.54 humidity 90 14400 > th dose independent rect. 5 1
165 162.63 humidity 90 14400 < th dose independent rect. 5 1
168 162.76 radiation 1 43200 < th dose dependent sin 7 NA
181 162.89 humidity 90 43200 < th dose independent rect. 24 1
201 163.06 humidity 90 43200 > th dose independent rect. 24 1
202 163.06 radiation 30 43200 < th dose independent rect. 15 4
207 163.07 radiation 30 43200 < th dose independent rect. 15 10
209 163.07 radiation 30 43200 < th dose independent rect. 15 13
210 163.08 humidity 60 43200 < th dose independent rect. 7 2
241 163.25 humidity 60 43200 < th dose independent rect. 2 7
247 163.31 radiation 1 43200 > th dose independent rect. 7 2
249 163.33 humidity 60 43200 < th dose independent rect. 4 5
255 163.43 radiation 1 43200 < th dose independent rect. 7 2
269 163.47 radiation 1 43200 > th dose independent rect. 7 4
308 163.61 radiation 1 43200 < th dose independent rect. 7 4
332 163.67 humidity 60 43200 > th dose independent rect. 7 2
334 163.67 radiation 1 43200 < th dose dependent rect. 7 1
351 163.78 humidity 60 43200 < th dose dependent rect. 7 3
352 163.81 radiation 30 43200 > th dose independent rect. 7 1
407 164.01 humidity 60 43200 < th dose dependent rect. 2 8
412 164.03 humidity 90 43200 > th dose independent rect. 23 5
467 164.27 humidity 60 43200 > th dose independent rect. 22 11
468 164.27 humidity 90 43200 > th dose dependent rect. 24 15
469 164.28 humidity 60 43200 < th dose dependent rect. 20 15
483 164.36 humidity 60 43200 > th dose independent rect. 2 7
489 164.36 temperature 20 43200 < th dose dependent rect. 5 11
549 164.58 temperature 20 43200 < th dose dependent rect. 6 2
598 164.66 temperature 20 43200 < th dose dependent sin 2 NA
704 164.88 temperature 20 43200 < th dose independent rect. 15 1
739 164.94 temperature 20 43200 < th dose dependent rect. 24 1
745 164.96 temperature 20 43200 < th dose dependent rect. 2 1
759 164.99 temperature 20 43200 < th dose dependent rect. 24 3
772 165.02 radiation 10 43200 < th dose dependent sin 13 NA
779 165.04 temperature 20 43200 > th dose independent rect. 14 2
787 165.05 humidity 90 43200 > th dose dependent sin 7 NA
791 165.06 humidity 80 14400 > th dose dependent rect. 5 2
793 165.07 humidity 50 43200 > th dose independent rect. 19 16
797 165.08 wind 1 43200 < th dose dependent rect. 22 7
806 165.09 wind 1 43200 < th dose dependent rect. 18 11
809 165.10 wind 1 43200 < th dose independent rect. 20 8
819 165.11 temperature 20 43200 < th dose dependent rect. 24 8
902 165.23 temperature 20 43200 < th dose dependent rect. 10 22
921 165.26 humidity 50 43200 > th dose independent rect. 17 19
928 165.27 wind 1 43200 < th dose independent rect. 22 6
944 165.29 temperature 20 43200 < th dose dependent no NA NA
953 165.29 temperature 20 43200 < th dose dependent rect. 13 23
962 165.30 temperature 20 43200 < th dose dependent rect. 5 23