BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0444100 Os10g0444100|AK071645
(274 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G37025.1 | chr2:15550042-15551957 FORWARD LENGTH=411 76 2e-14
AT1G72650.2 | chr1:27350253-27353483 FORWARD LENGTH=631 74 1e-13
AT1G17460.2 | chr1:5999519-6002546 FORWARD LENGTH=625 69 2e-12
AT1G17520.1 | chr1:6024959-6027224 REVERSE LENGTH=297 50 2e-06
>AT2G37025.1 | chr2:15550042-15551957 FORWARD LENGTH=411
Length = 410
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
Query: 168 TTRDKRCRLRKNNDHWTIKEVKNLVQGVSKHGVGRWTELKRDFFSTSI-RTSVHLKDKWR 226
T+R K R RKN WT+ EV NLV G+S GVG+WT++K FF + R V ++DKWR
Sbjct: 281 TSRTKSDR-RKNQRIWTLDEVMNLVDGISHFGVGKWTDIKNHFFHYAAHRKPVDIRDKWR 339
Query: 227 NLLKACGIDFTSTAKGKAQ-KTMLWPLDKRLTEQIIQLAYKHPYPRQK 273
NLLKA + + + + + K++ + K + ++ +LA HPYP K
Sbjct: 340 NLLKASYNEKHNDGQAEEKRKSVARSIPKDILHRVRELASLHPYPFSK 387
>AT1G72650.2 | chr1:27350253-27353483 FORWARD LENGTH=631
Length = 630
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Query: 177 RKNNDHWTIKEVKNLVQGVSKHGVGRWTELKRDFFST-SIRTSVHLKDKWRNLLKACGID 235
RK++ WT+ E+ LV+GVSK+G G+W+E+K+ FS+ S RTSV LKDKWRNLLK
Sbjct: 537 RKHHRAWTLSEIAKLVEGVSKYGAGKWSEIKKHLFSSHSYRTSVDLKDKWRNLLKTSFAQ 596
Query: 236 FTSTAKGKAQKTMLWPLDKRLTEQIIQLAYK 266
S + G +K + ++ ++ +LA K
Sbjct: 597 SPSNSVGSLKKHGSMHIPTQILLRVRELAEK 627
>AT1G17460.2 | chr1:5999519-6002546 FORWARD LENGTH=625
Length = 624
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 58/92 (63%), Gaps = 4/92 (4%)
Query: 177 RKNNDHWTIKEVKNLVQGVSKHGVGRWTELKRDFFS-TSIRTSVHLKDKWRNLLKACGID 235
RK + WTI EV+ LV+GVSK+GVG+WTE+K+ FS + RT+V LKDKWRNL KA
Sbjct: 513 RKLHRAWTISEVEKLVEGVSKYGVGKWTEIKKLSFSPYTHRTTVDLKDKWRNLQKASS-- 570
Query: 236 FTSTAKGKAQKTMLWPLDKRLTEQIIQLAYKH 267
++ +G +K + + Q+ +LA K
Sbjct: 571 -SNRMEGGLKKHGSMAIPTHIMLQVRELAQKQ 601
>AT1G17520.1 | chr1:6024959-6027224 REVERSE LENGTH=297
Length = 296
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 183 WTIKEVKNLVQGVSKHGVGRWTELKRD---FFSTSIRTSVHLKDKWRNLLKACGI 234
WT +E + L+ GV KHG G+W + RD S R+++ LKDKWRNL A GI
Sbjct: 8 WTAEEEEALLAGVRKHGPGKWKNILRDPELAEQLSSRSNIDLKDKWRNLSVAPGI 62
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.135 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,046,131
Number of extensions: 237743
Number of successful extensions: 663
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 667
Number of HSP's successfully gapped: 7
Length of query: 274
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 177
Effective length of database: 8,447,217
Effective search space: 1495157409
Effective search space used: 1495157409
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)