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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0443800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Homeodomain-like containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.2 (0.0615) R2 : 0.442
β1 : -0.281 (0.313) R2dD : 0.00347 R2D : 0.0398
β2 : 0.572 (0.115) R2dC : 0.0308 R2C : 0.0137
β3 : -1.28 (0.182) R2dE : 0.0849 R2E : 0.186
β4 : -2.49 (0.461) R2dD*C : 0.0364 R2D*C : 0.00812
β5 : 5.6 (0.922) R2dD*E : 0.168 R2D*E : 0.278
γ1 : -0.0842 (0.128) R2dN8 : 0.00118 R2N8 : -0.000698
σ : 0.876
deviance : 347.88
__
_____
C
peak time of C : 21.3
E
wheather : temperature
threshold : 18
memory length : 5176
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
347.88 0.876 3.2 -0.281 0.572 -1.28 -2.49 5.6 -0.0842 21.3 18 5176 -- --
372.18 0.899 3.36 -1.31 0.524 -1.73 -2.54 -- -0.177 21.1 12 11708 -- --
367.45 0.893 3.19 -0.124 0.531 -1.26 -- 5.41 -0.0423 21.7 17.9 5796 -- --
390.97 0.921 3.36 -1.23 0.551 -1.68 -- -- -0.202 21.7 10.91 12178 -- --
383.33 0.912 3.17 -0.156 -- -1.27 -- 5.36 -0.0343 -- 17.5 5814 -- --
416.66 0.957 3.5 -2.44 0.511 -- -2.43 -- -0.805 21.1 -- -- -- --
437.31 0.979 3.5 -2.36 0.518 -- -- -- -0.804 21.5 -- -- -- --
407.39 0.94 3.36 -1.27 -- -1.68 -- -- -0.236 -- 9.442 11648 -- --
399.87 0.931 3.3 -- 0.56 -2.26 -- -- 0.112 21.6 7.987 39701 -- --
453.1 0.995 3.49 -2.36 -- -- -- -- -0.805 -- -- -- -- --
584.05 1.13 3.44 -- 0.516 -- -- -- -0.541 21.2 -- -- -- --
417.92 0.952 3.28 -- -- -2.24 -- -- 0.0994 -- 7.315 40379 -- --
599.51 1.14 3.43 -- -- -- -- -- -0.544 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 331.59 atmosphere 1010 14400 > th dose independent rect. 19 1
2 331.64 atmosphere 1010 14400 < th dose independent rect. 19 1
25 333.69 wind 5 43200 < th dose independent rect. 10 6
29 333.85 wind 5 43200 > th dose independent rect. 10 6
35 333.95 temperature 15 43200 > th dose independent rect. 8 3
37 333.98 atmosphere 1010 14400 > th dose independent rect. 10 1
38 333.99 temperature 15 43200 < th dose independent rect. 9 2
39 333.99 wind 9 43200 < th dose dependent rect. 11 4
42 334.02 wind 1 43200 > th dose dependent rect. 11 4
54 334.18 radiation 1 14400 < th dose dependent rect. 5 1
112 334.75 temperature 15 43200 > th dose independent rect. 21 1
117 334.77 radiation 1 14400 < th dose dependent rect. 3 3
122 334.80 atmosphere 1010 14400 > th dose independent rect. 10 12
139 334.90 atmosphere 1010 14400 < th dose independent rect. 10 1
144 334.91 radiation 1 14400 < th dose dependent rect. 22 8
145 334.91 radiation 1 14400 < th dose dependent rect. 20 10
154 334.98 temperature 15 43200 > th dose independent rect. 20 3
176 335.07 temperature 15 43200 < th dose independent rect. 21 1
188 335.11 atmosphere 1010 14400 < th dose independent rect. 10 13
199 335.17 temperature 15 43200 < th dose independent rect. 20 4
211 335.22 atmosphere 1010 43200 < th dose independent rect. 22 1
235 335.29 atmosphere 1010 14400 < th dose independent rect. 7 16
281 335.45 atmosphere 1010 14400 > th dose independent sin 19 NA
311 335.56 temperature 15 43200 > th dose independent rect. 8 17
351 335.64 atmosphere 1010 14400 < th dose independent sin 19 NA
361 335.66 temperature 15 43200 < th dose independent rect. 5 7
389 335.70 temperature 15 43200 > th dose independent rect. 4 20
423 335.75 temperature 15 43200 < th dose independent rect. 9 16
424 335.75 temperature 15 43200 < th dose independent rect. 8 18
474 335.81 atmosphere 1005 43200 > th dose dependent rect. 1 1
478 335.82 atmosphere 1010 43200 < th dose independent rect. 18 17
507 335.85 atmosphere 1010 43200 < th dose independent rect. 18 14
554 335.89 atmosphere 1010 43200 < th dose independent rect. 22 13
561 335.89 temperature 15 43200 < th dose independent rect. 4 21
566 335.90 atmosphere 1010 43200 > th dose independent rect. 18 17
598 335.93 atmosphere 1010 43200 < th dose independent rect. 22 11
611 335.94 temperature 15 43200 > th dose independent sin 1 NA
621 335.94 temperature 15 43200 < th dose independent rect. 17 19
634 335.95 atmosphere 1010 43200 > th dose independent rect. 18 14
644 335.96 atmosphere 1010 43200 < th dose independent sin 10 NA
665 335.97 temperature 15 43200 > th dose independent sin 17 NA
681 335.98 atmosphere 1010 43200 < th dose independent rect. 7 4
771 336.02 atmosphere 1010 43200 < th dose independent rect. 7 1
786 336.03 temperature 15 43200 < th dose independent sin 16 NA
801 336.03 temperature 15 43200 > th dose independent rect. 16 20
812 336.04 atmosphere 1010 43200 > th dose independent sin 11 NA
835 336.04 atmosphere 1010 14400 > th dose dependent rect. 20 1
839 336.05 atmosphere 1010 43200 > th dose independent rect. 1 1
846 336.05 atmosphere 1010 43200 > th dose independent rect. 22 13
866 336.06 temperature 15 43200 > th dose independent no NA NA
867 336.06 temperature 15 43200 < th dose independent no NA NA
936 336.09 atmosphere 1010 43200 < th dose independent rect. 1 1
982 336.11 temperature 15 43200 > th dose independent rect. 4 14