BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0443800 Os10g0443800|J080064A02
         (121 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0443800  Homeodomain-like containing protein                 248   1e-66
Os10g0444100  Homeodomain-like containing protein                 164   1e-41
Os02g0776700  Similar to Single myb histone 6                      65   1e-11

>Os10g0443800 Homeodomain-like containing protein
          Length = 121

 Score =  248 bits (632), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 121/121 (100%), Positives = 121/121 (100%)

Query: 1   QFLLSSQKPLRFGTTTIRRHHLRKNNEHWTFKEITELVKGVSKHGVGSWTKLKRDFFSTS 60
           QFLLSSQKPLRFGTTTIRRHHLRKNNEHWTFKEITELVKGVSKHGVGSWTKLKRDFFSTS
Sbjct: 1   QFLLSSQKPLRFGTTTIRRHHLRKNNEHWTFKEITELVKGVSKHGVGSWTKLKRDFFSTS 60

Query: 61  IRTAVHLKDKWRNLLKACGIKFTSKRKVKVQKTMILSLDMELVEEIKHLASKHPYPRRKN 120
           IRTAVHLKDKWRNLLKACGIKFTSKRKVKVQKTMILSLDMELVEEIKHLASKHPYPRRKN
Sbjct: 61  IRTAVHLKDKWRNLLKACGIKFTSKRKVKVQKTMILSLDMELVEEIKHLASKHPYPRRKN 120

Query: 121 Y 121
           Y
Sbjct: 121 Y 121



>Os10g0444100 Homeodomain-like containing protein
          Length = 274

 Score =  164 bits (415), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 79/110 (71%), Positives = 88/110 (80%)

Query: 10  LRFGTTTIRRHHLRKNNEHWTFKEITELVKGVSKHGVGSWTKLKRDFFSTSIRTAVHLKD 69
           L FGTT  +R  LRKNN+HWT KE+  LV+GVSKHGVG WT+LKRDFFSTSIRT+VHLKD
Sbjct: 164 LCFGTTRDKRCRLRKNNDHWTIKEVKNLVQGVSKHGVGRWTELKRDFFSTSIRTSVHLKD 223

Query: 70  KWRNLLKACGIKFTSKRKVKVQKTMILSLDMELVEEIKHLASKHPYPRRK 119
           KWRNLLKACGI FTS  K K QKTM+  LD  L E+I  LA KHPYPR+K
Sbjct: 224 KWRNLLKACGIDFTSTAKGKAQKTMLWPLDKRLTEQIIQLAYKHPYPRQK 273



>Os02g0776700 Similar to Single myb histone 6
          Length = 621

 Score = 65.1 bits (157), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 49/69 (71%), Gaps = 1/69 (1%)

Query: 18  RRHHLRKNNEHWTFKEITELVKGVSKHGVGSWTKLKRDFFST-SIRTAVHLKDKWRNLLK 76
           +R   RK++  WT  E+ +LV GV+++G G W++++R  FS+ S RT+V LKDKWRNL++
Sbjct: 494 KRGGKRKHHRAWTLCEVVKLVDGVARYGAGKWSEIRRLAFSSYSYRTSVDLKDKWRNLIR 553

Query: 77  ACGIKFTSK 85
           A   + +++
Sbjct: 554 ASQTQLSTE 562



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.133    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,886,410
Number of extensions: 126451
Number of successful extensions: 452
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 455
Number of HSP's successfully gapped: 3
Length of query: 121
Length of database: 17,035,801
Length adjustment: 87
Effective length of query: 34
Effective length of database: 12,493,183
Effective search space: 424768222
Effective search space used: 424768222
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)