BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0439600 Os10g0439600|AK067419
         (330 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0439600  Similar to RNA-binding region containing prote...   582   e-166
Os03g0153000  Nucleotide-binding, alpha-beta plait domain co...   122   5e-28

>Os10g0439600 Similar to RNA-binding region containing protein 2 (Coactivator of
           activating protein-1 and estrogen receptors)
           (Coactivator of AP-1 and ERs) (Transcription coactivator
           CAPER). Splice isoform 3
          Length = 330

 Score =  582 bits (1499), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 298/330 (90%), Positives = 298/330 (90%)

Query: 1   HGRYIEFYDAMSVPMAIALTGQVLLGQQVMVKPSEAEKNLVQSNVASGGIASGGARKLYV 60
           HGRYIEFYDAMSVPMAIALTGQVLLGQQVMVKPSEAEKNLVQSNVASGGIASGGARKLYV
Sbjct: 1   HGRYIEFYDAMSVPMAIALTGQVLLGQQVMVKPSEAEKNLVQSNVASGGIASGGARKLYV 60

Query: 61  GNLHSNITEDQLRQVFEPFGQVELVQLPVDPLTGLCKGFGFIQFARLEDAKAAQSLNGQL 120
           GNLHSNITEDQLRQVFEPFGQVELVQLPVDPLTGLCKGFGFIQFARLEDAKAAQSLNGQL
Sbjct: 61  GNLHSNITEDQLRQVFEPFGQVELVQLPVDPLTGLCKGFGFIQFARLEDAKAAQSLNGQL 120

Query: 121 DIAGRVIKVSAVTEQAGLQVXXXXXXXXXXXXXXXXXXNASSRAMLMRKLDRSXXXXXXX 180
           DIAGRVIKVSAVTEQAGLQV                  NASSRAMLMRKLDRS       
Sbjct: 121 DIAGRVIKVSAVTEQAGLQVGGATTGDLDDDEGGGLALNASSRAMLMRKLDRSGTATSIT 180

Query: 181 XXXXXXXVNTSVELPSASVTGAPLPTTSLIQPTIPAIGTVPGIQIPGTQSADIGSPTEFL 240
                  VNTSVELPSASVTGAPLPTTSLIQPTIPAIGTVPGIQIPGTQSADIGSPTEFL
Sbjct: 181 GGIGIPGVNTSVELPSASVTGAPLPTTSLIQPTIPAIGTVPGIQIPGTQSADIGSPTEFL 240

Query: 241 LLKNMFDPAVETDPDFDLDIKDDVQDECSKFGAVNHIFVDKNTAGFVYLHFDSVAAATAA 300
           LLKNMFDPAVETDPDFDLDIKDDVQDECSKFGAVNHIFVDKNTAGFVYLHFDSVAAATAA
Sbjct: 241 LLKNMFDPAVETDPDFDLDIKDDVQDECSKFGAVNHIFVDKNTAGFVYLHFDSVAAATAA 300

Query: 301 QRALHGRWFAGKMITATFMTAQQYKMKFPN 330
           QRALHGRWFAGKMITATFMTAQQYKMKFPN
Sbjct: 301 QRALHGRWFAGKMITATFMTAQQYKMKFPN 330



>Os03g0153000 Nucleotide-binding, alpha-beta plait domain containing protein
          Length = 103

 Score =  122 bits (305), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 66/73 (90%), Positives = 69/73 (94%)

Query: 3  RYIEFYDAMSVPMAIALTGQVLLGQQVMVKPSEAEKNLVQSNVASGGIASGGARKLYVGN 62
          RYIEFYD MSVPMAIAL+GQ+LLGQQVMVKPSEAEKNLVQSN +S G ASGGARKLYVGN
Sbjct: 9  RYIEFYDVMSVPMAIALSGQLLLGQQVMVKPSEAEKNLVQSNASSSGAASGGARKLYVGN 68

Query: 63 LHSNITEDQLRQV 75
          LHSNITEDQLRQV
Sbjct: 69 LHSNITEDQLRQV 81



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.134    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,220,394
Number of extensions: 365456
Number of successful extensions: 1456
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1466
Number of HSP's successfully gapped: 2
Length of query: 330
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 229
Effective length of database: 11,762,187
Effective search space: 2693540823
Effective search space used: 2693540823
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)