FiT-DB / Search/ Help/ Sample detail
|
Os10g0439600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to RNA-binding region containing protein 2 (Coactivator of activating protein-1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER). Splice isoform 3.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.36 | 0.184 | 11.3 | 0.462 | 0.323 | -0.273 | -0.39 | -2.28 | 0.18 | 17.9 | 30.3 | 2817 | -- | -- |
| 15.57 | 0.184 | 11.3 | 0.873 | 0.326 | -0.546 | -0.408 | -- | 0.18 | 17.9 | 31.44 | 2725 | -- | -- |
| 15.47 | 0.183 | 11.3 | 0.479 | 0.327 | -0.279 | -- | -2.27 | 0.182 | 18.3 | 31.3 | 2685 | -- | -- |
| 15.83 | 0.185 | 11.3 | 0.878 | 0.328 | -0.545 | -- | -- | 0.181 | 18.3 | 31.5 | 2699 | -- | -- |
| 20.88 | 0.213 | 11.3 | 0.381 | -- | -0.212 | -- | -2.83 | 0.173 | -- | 31.2 | 2768 | -- | -- |
| 28.46 | 0.25 | 11.2 | 0.721 | 0.354 | -- | -0.347 | -- | 0.288 | 17.5 | -- | -- | -- | -- |
| 28.74 | 0.251 | 11.2 | 0.722 | 0.353 | -- | -- | -- | 0.287 | 17.7 | -- | -- | -- | -- |
| 21.44 | 0.216 | 11.3 | 0.867 | -- | -0.554 | -- | -- | 0.17 | -- | 31.39 | 2754 | -- | -- |
| 35.03 | 0.276 | 11.3 | -- | 0.326 | -0.476 | -- | -- | 0.114 | 18.1 | 31.3 | 3301 | -- | -- |
| 35.19 | 0.277 | 11.2 | 0.711 | -- | -- | -- | -- | 0.278 | -- | -- | -- | -- | -- |
| 42.49 | 0.305 | 11.3 | -- | 0.341 | -- | -- | -- | 0.206 | 17.8 | -- | -- | -- | -- |
| 40.35 | 0.296 | 11.3 | -- | -- | -0.423 | -- | -- | 0.103 | -- | 30.8 | 2757 | -- | -- |
| 48.53 | 0.325 | 11.3 | -- | -- | -- | -- | -- | 0.199 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.13 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 15 |
| 2 | 15.13 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 17 |
| 4 | 15.14 | temperature | 30 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 11 | 15.14 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 11 |
| 23 | 15.15 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 9 |
| 27 | 15.17 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 56 | 15.22 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 61 | 15.22 | temperature | 30 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 62 | 15.23 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 85 | 15.29 | temperature | 30 | 1440 | > th | dose dependent | rect. | 8 | 5 |
| 103 | 15.31 | temperature | 30 | 1440 | > th | dose independent | sin | 7 | NA |
| 110 | 15.32 | temperature | 30 | 1440 | < th | dose independent | sin | 8 | NA |
| 154 | 15.39 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 22 |
| 162 | 15.42 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 21 |
| 174 | 15.44 | temperature | 30 | 1440 | > th | dose dependent | sin | 7 | NA |
| 176 | 15.45 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 177 | 15.45 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 291 | 15.54 | temperature | 30 | 1440 | > th | dose independent | rect. | 8 | 10 |
| 349 | 15.57 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 365 | 15.59 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 16 |
| 380 | 15.60 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 10 |
| 438 | 15.63 | temperature | 25 | 1440 | > th | dose dependent | rect. | 1 | 8 |
| 457 | 15.66 | temperature | 30 | 4320 | > th | dose dependent | sin | 22 | NA |
| 516 | 15.67 | temperature | 30 | 4320 | > th | dose dependent | no | NA | NA |
| 635 | 15.67 | temperature | 30 | 4320 | > th | dose dependent | rect. | 14 | 23 |
| 667 | 15.68 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 16 |
| 711 | 15.70 | temperature | 30 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 715 | 15.70 | temperature | 25 | 4320 | > th | dose dependent | rect. | 19 | 4 |
| 725 | 15.71 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 889 | 15.74 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 969 | 15.77 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 970 | 15.77 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 974 | 15.77 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 20 |
| 980 | 15.77 | temperature | 30 | 1440 | < th | dose independent | rect. | 1 | 23 |
