Os03g0153000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nucleotide-binding, alpha-beta plait domain containing protein.
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Os03g0153000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nucleotide-binding, alpha-beta plait domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.97 | 0.319 | 9.93 | -0.017 | 0.13 | 1.38 | 0.113 | -2.16 | -0.12 | 9.74 | 18.99 | 83 | -- | -- |
| 49.63 | 0.328 | 9.89 | 0.379 | 0.082 | 1.34 | -0.425 | -- | -0.00202 | 12.6 | 17.5 | 51 | -- | -- |
| 46.01 | 0.316 | 9.93 | -0.0123 | 0.131 | 1.38 | -- | -2.14 | -0.118 | 9.53 | 19.01 | 83 | -- | -- |
| 50.09 | 0.33 | 9.89 | 0.347 | 0.106 | 1.42 | -- | -- | -0.0134 | 10.4 | 16.72 | 54 | -- | -- |
| 46.75 | 0.318 | 9.94 | 0.00154 | -- | 1.42 | -- | -2.06 | -0.12 | -- | 18.98 | 62 | -- | -- |
| 74.16 | 0.404 | 9.84 | 0.663 | 0.506 | -- | -0.235 | -- | 0.21 | 14.1 | -- | -- | -- | -- |
| 74.37 | 0.404 | 9.84 | 0.656 | 0.506 | -- | -- | -- | 0.208 | 14.1 | -- | -- | -- | -- |
| 50.63 | 0.331 | 9.89 | 0.341 | -- | 1.43 | -- | -- | -0.021 | -- | 17.5 | 46 | -- | -- |
| 52.85 | 0.339 | 9.9 | -- | 0.11 | 1.66 | -- | -- | -0.0662 | 8.6 | 15.27 | 63 | -- | -- |
| 89.74 | 0.443 | 9.85 | 0.635 | -- | -- | -- | -- | 0.196 | -- | -- | -- | -- | -- |
| 85.72 | 0.433 | 9.86 | -- | 0.494 | -- | -- | -- | 0.135 | 14 | -- | -- | -- | -- |
| 53.39 | 0.34 | 9.91 | -- | -- | 1.67 | -- | -- | -0.0704 | -- | 15.46 | 47 | -- | -- |
| 100.38 | 0.468 | 9.86 | -- | -- | -- | -- | -- | 0.126 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.96 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 2 | 44.07 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 30 | 45.08 | temperature | 20 | 30 | > th | dose dependent | rect. | 7 | 23 |
| 34 | 45.12 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 21 |
| 41 | 45.26 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 64 | 45.54 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 6 |
| 69 | 45.60 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 84 | 45.76 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 6 |
| 91 | 45.84 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 134 | 46.22 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 13 |
| 143 | 46.27 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 13 |
| 150 | 46.31 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 176 | 46.50 | temperature | 20 | 4320 | > th | dose independent | sin | 12 | NA |
| 204 | 46.66 | temperature | 20 | 4320 | < th | dose independent | sin | 12 | NA |
| 227 | 46.74 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 17 |
| 233 | 46.77 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 239 | 46.81 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 241 | 46.81 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 4 |
| 287 | 46.99 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 368 | 47.28 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 14 |
| 424 | 47.46 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 459 | 47.54 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 8 |
| 465 | 47.55 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 470 | 47.56 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 502 | 47.61 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 621 | 47.84 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 676 | 47.93 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 696 | 47.96 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 752 | 48.02 | temperature | 25 | 1440 | < th | dose dependent | rect. | 6 | 3 |
| 789 | 48.07 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 855 | 48.16 | temperature | 20 | 1440 | > th | dose dependent | sin | 9 | NA |
| 881 | 48.19 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 2 |
| 927 | 48.25 | temperature | 20 | 4320 | > th | dose dependent | rect. | 18 | 2 |
| 943 | 48.27 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 5 |
| 953 | 48.29 | temperature | 25 | 4320 | < th | dose dependent | rect. | 20 | 3 |
| 999 | 48.35 | temperature | 20 | 4320 | > th | dose dependent | rect. | 7 | 16 |