BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0153000 Os03g0153000|J065044D08
         (103 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0153000  Nucleotide-binding, alpha-beta plait domain co...   186   3e-48
Os10g0439600  Similar to RNA-binding region containing prote...   122   8e-29

>Os03g0153000 Nucleotide-binding, alpha-beta plait domain containing protein
          Length = 103

 Score =  186 bits (473), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 92/103 (89%), Positives = 92/103 (89%)

Query: 1   YLLCFCVSRYIEFYDVMSVPMAIALSGQLLLGQQVMVKPSEAEKNLVQSNXXXXXXXXXX 60
           YLLCFCVSRYIEFYDVMSVPMAIALSGQLLLGQQVMVKPSEAEKNLVQSN          
Sbjct: 1   YLLCFCVSRYIEFYDVMSVPMAIALSGQLLLGQQVMVKPSEAEKNLVQSNASSSGAASGG 60

Query: 61  XRKLYVGNLHSNITEDQLRQVMPTNCFLDELAVLLEENFPWSS 103
            RKLYVGNLHSNITEDQLRQVMPTNCFLDELAVLLEENFPWSS
Sbjct: 61  ARKLYVGNLHSNITEDQLRQVMPTNCFLDELAVLLEENFPWSS 103



>Os10g0439600 Similar to RNA-binding region containing protein 2 (Coactivator
          of activating protein-1 and estrogen receptors)
          (Coactivator of AP-1 and ERs) (Transcription
          coactivator CAPER). Splice isoform 3
          Length = 330

 Score =  122 bits (305), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 59/73 (80%), Positives = 61/73 (83%)

Query: 9  RYIEFYDVMSVPMAIALSGQLLLGQQVMVKPSEAEKNLVQSNXXXXXXXXXXXRKLYVGN 68
          RYIEFYD MSVPMAIAL+GQ+LLGQQVMVKPSEAEKNLVQSN           RKLYVGN
Sbjct: 3  RYIEFYDAMSVPMAIALTGQVLLGQQVMVKPSEAEKNLVQSNVASGGIASGGARKLYVGN 62

Query: 69 LHSNITEDQLRQV 81
          LHSNITEDQLRQV
Sbjct: 63 LHSNITEDQLRQV 75



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,620,471
Number of extensions: 67086
Number of successful extensions: 212
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 212
Number of HSP's successfully gapped: 2
Length of query: 103
Length of database: 17,035,801
Length adjustment: 71
Effective length of query: 32
Effective length of database: 13,328,607
Effective search space: 426515424
Effective search space used: 426515424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)