BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0153000 Os03g0153000|J065044D08
         (103 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G09880.1  | chr5:3081646-3085179 REVERSE LENGTH=528            108   8e-25
AT2G16940.2  | chr2:7342869-7347052 REVERSE LENGTH=611             98   8e-22

>AT5G09880.1 | chr5:3081646-3085179 REVERSE LENGTH=528
          Length = 527

 Score =  108 bits (269), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 53/72 (73%), Positives = 56/72 (77%)

Query: 10  YIEFYDVMSVPMAIALSGQLLLGQQVMVKPSEAEKNLVQSNXXXXXXXXXXXRKLYVGNL 69
           YIEFYDVMSVPMAIALSGQL LGQ VMVKPSEAEKNL QSN           RKLYVGNL
Sbjct: 213 YIEFYDVMSVPMAIALSGQLFLGQPVMVKPSEAEKNLAQSNSTTVGGTGPADRKLYVGNL 272

Query: 70  HSNITEDQLRQV 81
           H N++E QLRQ+
Sbjct: 273 HFNMSELQLRQI 284



>AT2G16940.2 | chr2:7342869-7347052 REVERSE LENGTH=611
          Length = 610

 Score = 98.2 bits (243), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 50/81 (61%), Positives = 56/81 (69%), Gaps = 6/81 (7%)

Query: 10  YIEFYDVMSVPMAIALSGQLLLGQQVMVKPSEAEKNLVQSNXXXXXXXXXX------XRK 63
           Y+EFYD MSVPMAIALSGQ LLGQ VMVKPSEAEKNLVQS                  R+
Sbjct: 276 YVEFYDTMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARR 335

Query: 64  LYVGNLHSNITEDQLRQVMPT 84
           LYVGNLH N++ED LR+V  +
Sbjct: 336 LYVGNLHINMSEDDLRKVFES 356



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,817,938
Number of extensions: 48798
Number of successful extensions: 172
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 2
Length of query: 103
Length of database: 11,106,569
Length adjustment: 73
Effective length of query: 30
Effective length of database: 9,105,201
Effective search space: 273156030
Effective search space used: 273156030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)