BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0420200 Os10g0420200|AK110922
(340 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0420200 IQ calmodulin-binding region domain containing... 399 e-111
Os03g0161400 IQ calmodulin-binding region domain containing... 84 2e-16
>Os10g0420200 IQ calmodulin-binding region domain containing protein
Length = 340
Score = 399 bits (1026), Expect = e-111, Method: Compositional matrix adjust.
Identities = 219/340 (64%), Positives = 219/340 (64%)
Query: 1 MGKAGRWLRSFLAGKKDGGGRRSGERQQHGGGDATPAVEVAAASTREKKRWSFRRXXXXX 60
MGKAGRWLRSFLAGKKDGGGRRSGERQQHGGGDATPAVEVAAASTREKKRWSFRR
Sbjct: 1 MGKAGRWLRSFLAGKKDGGGRRSGERQQHGGGDATPAVEVAAASTREKKRWSFRRSSASA 60
Query: 61 XXXXMGKPAAVTAPSTPEPSVSGLASVSERARDVADLEGQSKHXXXXXXXXXXXEGDDXX 120
MGKPAAVTAPSTPEPSVSGLASVSERARDVADLEGQSKH EGDD
Sbjct: 61 SAAAMGKPAAVTAPSTPEPSVSGLASVSERARDVADLEGQSKHAMAVAAVATAAEGDDVS 120
Query: 121 XXXXXXXXXXMIQATYRGYLARKALCALRGLVKLQALIRGNLVRKQATATXXXXXXXXXX 180
MIQATYRGYLARKALCALRGLVKLQALIRGNLVRKQATAT
Sbjct: 121 ASAVEVVAAVMIQATYRGYLARKALCALRGLVKLQALIRGNLVRKQATATLRRMQALLVA 180
Query: 181 XXXXXXXXXXXXXXXXXXXVXXXXXXXXXXXXXXXXXXXXSYEMDRSGEEQAKIVEVDVG 240
V SYEMDRSGEEQAKIVEVDVG
Sbjct: 181 QARLRAQRMRMLEEEEDDDVHGHGHHHHRRSSPHHPRHRRSYEMDRSGEEQAKIVEVDVG 240
Query: 241 EPPPPHFERQXXXXXXXXXXXXXKMQRSSSXXXXXXXXXXXXXXLYSYGQYPWSVKQLDR 300
EPPPPHFERQ KMQRSSS LYSYGQYPWSVKQLDR
Sbjct: 241 EPPPPHFERQPSRRRGGGVPRSVKMQRSSSHVGVPAAHGYHHHHLYSYGQYPWSVKQLDR 300
Query: 301 SSASLKDSECGXXXXXXXXXXXXXGYCRSLVGLDLHRGHY 340
SSASLKDSECG GYCRSLVGLDLHRGHY
Sbjct: 301 SSASLKDSECGSTTSSVLTAATTVGYCRSLVGLDLHRGHY 340
>Os03g0161400 IQ calmodulin-binding region domain containing protein
Length = 417
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 132 IQATYRGYLARKALCALRGLVKLQALIRGNLVRKQATATXXXXXXXXXXXXXXXXXXXXX 191
IQAT+RGYLAR ALCALRG+VKLQAL+RG LVRKQATAT
Sbjct: 133 IQATFRGYLARTALCALRGIVKLQALVRGQLVRKQATAT---LRCMQALLAAQSQLRAQA 189
Query: 192 XXXXXXXXVXXXXXXXXXXXXXXXXXXXXSYEMDRSGEEQAKIVEVDVGEPPP 244
SYEMDRS EE AKIVEVD G P
Sbjct: 190 QRVRALHEHHRTPPRPRPPSPPQHPRHRRSYEMDRSCEENAKIVEVDSGAGEP 242
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.130 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,498,554
Number of extensions: 279273
Number of successful extensions: 1512
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1512
Number of HSP's successfully gapped: 3
Length of query: 340
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 238
Effective length of database: 11,709,973
Effective search space: 2786973574
Effective search space used: 2786973574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 156 (64.7 bits)