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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0161400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : IQ calmodulin-binding region domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.3 (0.0582) R2 : 0.818
β1 : -4.47 (0.218) R2dD : 0.185 R2D : 0.0977
β2 : 5.04 (0.155) R2dC : 0.443 R2C : 0.541
β3 : 3.58 (0.181) R2dE : 0.169 R2E : 0.201
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0278 (0.124) R2dN8 : 4.31e-05 R2N8 : -0.00246
σ : 1.09
deviance : 544.62
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_____
C
peak time of C : 5.77
E
wheather : temperature
threshold : 25.62
memory length : 1076
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 9.33
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
531.06 1.08 6.47 -5.82 5.02 4.17 -1.07 -6.01 -0.416 5.76 25.4 1113 9.84 --
540.21 1.08 6.3 -4.45 5.03 3.59 -1.25 -- -0.00514 5.74 25.69 1077 9.1 --
533.78 1.08 6.48 -5.88 5 4.2 -- -6.25 -0.428 5.78 25.36 1110 9.83 --
544.62 1.09 6.3 -4.47 5.04 3.58 -- -- -0.0278 5.77 25.62 1076 9.33 --
669.07 1.2 6.65 -5.76 -- 8.55 -- -6.08 -0.961 -- -4.074 1049 9.17 --
967.47 1.46 6.27 -3.57 5.7 -- -0.752 -- 0.0757 5.24 -- -- -- --
968.87 1.46 6.27 -3.57 5.69 -- -- -- 0.0793 5.25 -- -- -- --
644.53 1.18 6.54 -4.9 -- 8.69 -- -- -0.671 -- -13.56 1141 10 --
1047.98 1.51 6.14 -- 5.27 2.8 -- -- 0.543 5.61 26.55 1092 8.98 --
2661.4 2.41 6.34 -3.37 -- -- -- -- 0.222 -- -- -- -- --
1305.04 1.69 6.18 -- 5.63 -- -- -- 0.477 5.27 -- -- -- --
1186.57 1.6 6.35 -- -- 7.15 -- -- 0.154 -- -38.44 1102 9.74 --
2961.58 2.54 6.25 -- -- -- -- -- 0.596 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 567.18 temperature 25 1440 > th dose dependent rect. 13 10
22 569.89 temperature 25 1440 > th dose dependent rect. 13 18
48 572.16 temperature 25 1440 > th dose dependent sin 16 NA
167 587.19 temperature 25 1440 > th dose dependent rect. 6 18
176 587.58 temperature 25 720 > th dose dependent rect. 18 15
219 588.57 temperature 25 1440 > th dose dependent no NA NA
279 592.77 humidity 50 720 > th dose dependent rect. 17 8
284 593.06 humidity 90 720 < th dose dependent rect. 17 6
337 600.85 humidity 90 720 < th dose dependent rect. 18 3
352 604.06 temperature 30 1440 < th dose independent rect. 14 13
356 604.29 temperature 30 1440 < th dose independent rect. 14 5
357 604.30 temperature 30 1440 > th dose independent rect. 14 5
411 606.55 temperature 30 1440 < th dose independent sin 14 NA
416 606.99 temperature 30 1440 > th dose independent sin 14 NA
424 607.55 temperature 30 1440 < th dose independent rect. 14 20
462 609.36 temperature 30 1440 > th dose independent rect. 14 20
483 609.60 humidity 70 720 > th dose dependent rect. 18 5
642 613.70 temperature 30 1440 < th dose independent rect. 9 19
644 613.76 temperature 30 1440 < th dose independent rect. 9 10
672 613.95 temperature 30 1440 < th dose independent rect. 9 13
675 613.97 temperature 30 1440 < th dose independent rect. 9 22
681 614.13 temperature 30 1440 < th dose independent rect. 17 23
790 615.60 radiation 20 1440 < th dose dependent rect. 18 9
956 616.58 temperature 30 1440 < th dose independent rect. 6 22
965 616.64 temperature 30 1440 < th dose independent rect. 6 13
968 616.65 temperature 30 1440 < th dose independent rect. 21 22
970 616.67 temperature 30 1440 < th dose independent rect. 23 20