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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0420200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : IQ calmodulin-binding region domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.36 (0.0245) R2 : 0.00684
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0915 (0.0516) R2dN8 : 0.00884 R2N8 : 0.00684
σ : 0.462
deviance : 97.84
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
86.63 0.437 3.38 0.213 0.349 0.271 -0.555 1.35 0.0579 6.36 91.94 5853 -- --
89.27 0.44 3.37 0.154 0.362 0.286 -0.497 -- 0.0321 6.45 95.84 5536 -- --
87.36 0.435 3.37 0.208 0.356 0.258 -- 1.38 0.0629 6.42 91.69 5991 -- --
89.91 0.442 3.37 0.109 0.39 0.334 -- -- 0.019 6.57 107.8 4997 -- --
93.61 0.451 3.38 0.213 -- 0.278 -- 1.31 0.0691 -- 91.48 5733 -- --
90.5 0.446 3.36 0.0955 0.351 -- -0.567 -- 0.0929 6.3 -- -- -- --
91.29 0.447 3.36 0.0891 0.348 -- -- -- 0.095 6.42 -- -- -- --
96.14 0.457 3.37 0.123 -- 0.318 -- -- 0.047 -- 146.1 5680 -- --
90.23 0.442 3.37 -- 0.391 0.32 -- -- 0.0101 6.54 117.4 4995 -- --
97.58 0.462 3.36 0.098 -- -- -- -- 0.102 -- -- -- -- --
91.5 0.447 3.36 -- 0.349 -- -- -- 0.0851 6.4 -- -- -- --
96.48 0.457 3.38 -- -- 0.313 -- -- 0.019 -- 154.2 5643 -- --
97.84 0.462 3.36 -- -- -- -- -- 0.0915 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 79.43 humidity 80.0 10 < th dose independent rect. 6 2
3 79.90 radiation 10.0 30 > th dose independent rect. 7 1
6 80.06 humidity 80.0 10 < th dose independent rect. 23 9
13 81.46 temperature 25.0 30 > th dose independent rect. 7 1
36 82.20 radiation 10.0 10 > th dose independent rect. 16 16
45 84.86 humidity 90.0 90 < th dose dependent rect. 2 6
56 85.08 temperature 25.0 90 > th dose independent rect. 1 7
73 85.24 atmosphere 1005.0 10 > th dose independent rect. 7 1
77 85.31 humidity 90.0 10 < th dose dependent rect. 7 1
79 85.33 atmosphere 1005.0 10 > th dose dependent rect. 2 3
82 85.35 temperature 25.0 10 > th dose dependent rect. 7 1
84 85.38 radiation 10.0 10 > th dose independent sin 11 NA
91 85.44 temperature 25.0 90 > th dose independent rect. 1 3
109 85.48 temperature 25.0 90 > th dose dependent rect. 2 2
110 85.48 humidity 80.0 14400 < th dose dependent rect. 4 5
112 85.51 atmosphere 1000.0 30 > th dose independent rect. 3 23
114 85.52 temperature 25.0 90 > th dose dependent rect. 1 4
119 85.56 humidity 80.0 14400 < th dose dependent rect. 7 2
125 85.60 temperature 20.0 10 > th dose dependent rect. 2 7
142 85.86 temperature 25.0 270 > th dose independent rect. 2 1
154 85.95 atmosphere 1000.0 10 > th dose independent rect. 8 23
160 85.97 humidity 70.0 14400 > th dose independent rect. 8 1
162 85.97 atmosphere 1005.0 90 > th dose dependent rect. 2 1
169 86.02 temperature 25.0 30 > th dose independent rect. 4 5
204 86.20 humidity 70.0 14400 > th dose independent rect. 4 5
206 86.20 humidity 70.0 14400 > th dose independent rect. 24 9
209 86.20 wind 5.0 10 < th dose dependent rect. 7 1
216 86.22 humidity 70.0 14400 < th dose independent rect. 8 1
221 86.23 humidity 70.0 14400 < th dose independent rect. 7 3
236 86.25 wind 3.0 30 < th dose independent rect. 7 1
248 86.27 atmosphere 995.0 720 > th dose independent rect. 23 16
259 86.30 radiation 1.0 43200 < th dose dependent rect. 3 1
276 86.37 temperature 25.0 1440 < th dose independent rect. 1 1
279 86.38 humidity 90.0 720 < th dose independent rect. 24 5
289 86.44 atmosphere 1005.0 30 > th dose independent rect. 2 7
290 86.44 humidity 80.0 10 < th dose independent rect. 20 12
293 86.46 humidity 90.0 90 < th dose independent rect. 1 20
297 86.47 humidity 60.0 14400 < th dose independent rect. 11 1
306 86.50 radiation 1.0 90 > th dose independent rect. 8 22
321 86.51 temperature 25.0 30 > th dose independent rect. 20 13
330 86.53 temperature 25.0 90 < th dose independent rect. 21 9
331 86.54 humidity 50.0 14400 > th dose dependent rect. 8 1
339 86.57 humidity 70.0 4320 > th dose independent rect. 10 1
345 86.59 humidity 60.0 14400 < th dose dependent rect. 12 1
355 86.64 atmosphere 1000.0 10 > th dose independent rect. 9 17
366 86.67 radiation 1.0 10 > th dose dependent rect. 7 1
367 86.68 wind 1.0 30 > th dose independent rect. 7 1
375 86.69 humidity 90.0 720 < th dose independent rect. 24 7
379 86.70 precipitation 0.1 720 < th dose independent rect. 15 8
383 86.70 precipitation 0.1 720 < th dose dependent rect. 15 8
390 86.73 humidity 80.0 4320 > th dose independent rect. 7 6
392 86.73 humidity 80.0 4320 < th dose independent rect. 7 6
405 86.75 atmosphere 1010.0 30 < th dose dependent rect. 2 1
406 86.75 radiation 1.0 4320 < th dose dependent rect. 3 1
410 86.76 humidity 90.0 720 > th dose independent rect. 3 1
449 86.77 humidity 50.0 4320 > th dose dependent rect. 11 2
453 86.78 wind 3.0 30 < th dose independent rect. 2 1
458 86.79 wind 3.0 30 < th dose dependent rect. 2 1
485 86.82 humidity 70.0 4320 > th dose independent sin 4 NA
489 86.82 temperature 10.0 30 > th dose independent rect. 2 1
491 86.82 temperature 30.0 30 < th dose independent rect. 2 1
492 86.82 humidity 50.0 30 > th dose independent rect. 2 1
495 86.82 humidity 90.0 30 > th dose independent rect. 2 1
496 86.82 atmosphere 995.0 30 > th dose independent rect. 2 1
497 86.82 atmosphere 1005.0 30 > th dose independent rect. 2 1
498 86.82 atmosphere 1010.0 30 < th dose independent rect. 2 1
500 86.82 radiation 1.0 30 < th dose independent rect. 2 1
505 86.82 precipitation 0.1 30 < th dose independent rect. 2 1
518 86.82 temperature 10.0 30 > th dose independent rect. 3 23
519 86.82 humidity 50.0 30 > th dose dependent rect. 2 1
525 86.82 radiation 1.0 30 < th dose dependent rect. 2 1
530 86.82 precipitation 0.1 30 < th dose dependent rect. 2 1
532 86.82 humidity 80.0 4320 < th dose dependent rect. 10 5
533 86.83 wind 3.0 14400 > th dose independent rect. 19 1
547 86.83 humidity 90.0 4320 < th dose dependent rect. 6 9
573 86.84 humidity 50.0 4320 > th dose dependent rect. 3 12
579 86.85 temperature 25.0 720 > th dose independent rect. 20 7
580 86.85 atmosphere 1000.0 10 > th dose independent rect. 11 23
596 86.86 wind 9.0 1440 < th dose independent rect. 3 1
597 86.86 temperature 10.0 1440 > th dose independent rect. 3 1
600 86.86 temperature 30.0 1440 < th dose independent rect. 3 1
604 86.86 humidity 50.0 1440 > th dose independent rect. 3 1
614 86.86 atmosphere 995.0 1440 > th dose independent rect. 3 1
615 86.86 radiation 1.0 1440 < th dose independent rect. 3 1
648 86.86 temperature 10.0 1440 > th dose independent rect. 4 23
701 86.88 temperature 30.0 30 < th dose dependent rect. 2 1
712 86.89 atmosphere 1010.0 10 < th dose independent rect. 7 1
729 86.90 wind 1.0 30 > th dose independent rect. 2 1
766 86.91 humidity 70.0 4320 < th dose independent sin 4 NA
798 86.91 humidity 70.0 4320 > th dose dependent rect. 7 6
802 86.91 atmosphere 1000.0 30 > th dose dependent rect. 2 7
883 86.94 radiation 40.0 90 > th dose independent rect. 14 21
936 86.96 humidity 80.0 4320 < th dose dependent rect. 14 1
937 86.96 atmosphere 995.0 10 > th dose dependent rect. 7 1
948 86.97 precipitation 0.1 10 < th dose independent rect. 7 1
953 86.97 precipitation 0.1 10 < th dose dependent rect. 7 1
973 86.97 humidity 60.0 14400 < th dose dependent rect. 19 21