BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0420200 Os10g0420200|AK110922
(340 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G14750.1 | chr4:8470449-8471903 FORWARD LENGTH=388 79 5e-15
AT4G29150.1 | chr4:14378770-14380340 FORWARD LENGTH=400 63 2e-10
AT3G49260.3 | chr3:18262755-18265859 FORWARD LENGTH=473 63 3e-10
AT1G74690.1 | chr1:28061498-28063924 REVERSE LENGTH=588 62 4e-10
AT1G01110.2 | chr1:52239-54494 FORWARD LENGTH=528 61 1e-09
AT1G18840.1 | chr1:6501068-6503435 REVERSE LENGTH=573 59 3e-09
AT3G16490.1 | chr3:5603962-5605489 REVERSE LENGTH=390 59 3e-09
AT3G22190.1 | chr3:7831280-7833512 REVERSE LENGTH=423 59 4e-09
AT4G00820.1 | chr4:349300-351307 FORWARD LENGTH=535 59 4e-09
AT4G10640.1 | chr4:6571999-6574312 FORWARD LENGTH=424 57 1e-08
AT5G62070.1 | chr5:24930057-24932451 REVERSE LENGTH=404 57 2e-08
AT3G52290.1 | chr3:19394441-19396196 FORWARD LENGTH=431 57 2e-08
AT2G26180.1 | chr2:11143433-11144982 REVERSE LENGTH=417 56 3e-08
AT5G07240.1 | chr5:2272028-2274051 FORWARD LENGTH=402 55 4e-08
AT1G51960.1 | chr1:19310355-19311683 FORWARD LENGTH=352 55 5e-08
AT5G13460.1 | chr5:4316323-4318247 FORWARD LENGTH=444 55 7e-08
AT1G14380.1 | chr1:4918279-4920761 REVERSE LENGTH=665 54 1e-07
AT5G03040.1 | chr5:710380-712406 REVERSE LENGTH=462 53 2e-07
AT4G23060.1 | chr4:12087283-12090408 FORWARD LENGTH=485 52 6e-07
>AT4G14750.1 | chr4:8470449-8471903 FORWARD LENGTH=388
Length = 387
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 77/170 (45%), Gaps = 21/170 (12%)
Query: 1 MGKAGRWLRSFLAGKKDGGGRRSGERQQHGGGDATPAVEVAAASTREKKRWSFRRXXXXX 60
MGK +W RS L GKK+ R+ E T ++ + +EK+RWSFRR
Sbjct: 1 MGKTSKWFRSLLTGKKE----RTKEHIIQSECVFTSSI---PGTPKEKRRWSFRR----- 48
Query: 61 XXXXMGKPAAVTAPSTPEPSVSGLASVSERARDVADLEGQSKHXXXXXXXXXXXEGDDXX 120
++ T P P +++ S Q + +
Sbjct: 49 --------SSATGPPPPACAITLKDSPPPPPPPPPPPPLQQPFVVEIVDNEDE-QIKNVS 99
Query: 121 XXXXXXXXXXMIQATYRGYLARKALCALRGLVKLQALIRGNLVRKQATAT 170
IQA YR +LARKAL AL+GLVKLQAL+RG+LVRKQATAT
Sbjct: 100 AEEIEEFAAIKIQACYRSHLARKALRALKGLVKLQALVRGHLVRKQATAT 149
>AT4G29150.1 | chr4:14378770-14380340 FORWARD LENGTH=400
Length = 399
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 48/112 (42%), Gaps = 12/112 (10%)
Query: 132 IQATYRGYLARKALCALRGLVKLQALIRGNLVRKQATATXXXXXXXXXXXXXXXXXXXXX 191
IQ +RGYLARKAL ALRG+VK+QAL+RG LVR QA AT
Sbjct: 137 IQCAFRGYLARKALRALRGVVKIQALVRGFLVRNQAAATLRSMEALVRAQKTVKIQR--- 193
Query: 192 XXXXXXXXVXXXXXXXXXXXXXXXXXXXXSYEMDRSGEEQAKIVEVDVGEPP 243
S E +GEE AKIVEVD G P
Sbjct: 194 ---------ALRRNGNAAPARKSTERFSGSLENRNNGEETAKIVEVDTGTRP 236
>AT3G49260.3 | chr3:18262755-18265859 FORWARD LENGTH=473
Length = 472
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 35/40 (87%)
Query: 131 MIQATYRGYLARKALCALRGLVKLQALIRGNLVRKQATAT 170
+IQ+ YRGYLAR+AL AL+GLV+LQAL+RGN VRKQA T
Sbjct: 125 LIQSHYRGYLARRALRALKGLVRLQALVRGNHVRKQAQMT 164
>AT1G74690.1 | chr1:28061498-28063924 REVERSE LENGTH=588
Length = 587
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/39 (66%), Positives = 35/39 (89%)
Query: 132 IQATYRGYLARKALCALRGLVKLQALIRGNLVRKQATAT 170
+QA +RGYLAR+A AL+G+++LQALIRG+LVR+QA AT
Sbjct: 119 VQAAFRGYLARRAFWALKGIIRLQALIRGHLVRRQAVAT 157
>AT1G01110.2 | chr1:52239-54494 FORWARD LENGTH=528
Length = 527
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/40 (70%), Positives = 35/40 (87%)
Query: 131 MIQATYRGYLARKALCALRGLVKLQALIRGNLVRKQATAT 170
+IQ ++RGYLAR+AL AL+GLVKLQAL+RG+ VRKQA T
Sbjct: 126 VIQTSFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMT 165
>AT1G18840.1 | chr1:6501068-6503435 REVERSE LENGTH=573
Length = 572
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 73/174 (41%), Gaps = 25/174 (14%)
Query: 1 MGKAGRWLRSFLAGKKDGGGRRSGERQQHGGGDATPAVEVAAASTREKKRWSFRRXXXXX 60
MGK RWL+S L GKK S ++++ G EV S E+
Sbjct: 1 MGKPARWLKSVLLGKKPSKSSGSKDKERIVNGK-----EVVVISKIEE-------SDVVS 48
Query: 61 XXXXMGKPAAVTAPSTPEPSVSGLASVSE-RARDVADLEGQSKHXXXXXXXXXXXEGDDX 119
+G A T SG+ + DV+D E Q DD
Sbjct: 49 DLSSIGNAAVYT---------SGIVETQNLKHEDVSDDEIQVSEVQPTDSQDVASVPDDS 99
Query: 120 ---XXXXXXXXXXXMIQATYRGYLARKALCALRGLVKLQALIRGNLVRKQATAT 170
+QA YRGYLAR+A L+G+++LQALIRG++VR+QA +T
Sbjct: 100 LSESEKIQQEIAAVTVQAAYRGYLARRAFKILKGIIRLQALIRGHMVRRQAVST 153
>AT3G16490.1 | chr3:5603962-5605489 REVERSE LENGTH=390
Length = 389
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/39 (71%), Positives = 34/39 (87%)
Query: 132 IQATYRGYLARKALCALRGLVKLQALIRGNLVRKQATAT 170
IQ+ ++GYLARKAL AL+GLVKLQAL+RG LVRK+A T
Sbjct: 113 IQSVFKGYLARKALRALKGLVKLQALVRGYLVRKRAAET 151
>AT3G22190.1 | chr3:7831280-7833512 REVERSE LENGTH=423
Length = 422
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/39 (69%), Positives = 33/39 (84%)
Query: 132 IQATYRGYLARKALCALRGLVKLQALIRGNLVRKQATAT 170
IQ YRG+LAR+AL AL+GLV+LQAL+RG+ VRKQA T
Sbjct: 94 IQTAYRGFLARRALRALKGLVRLQALVRGHAVRKQAAVT 132
>AT4G00820.1 | chr4:349300-351307 FORWARD LENGTH=535
Length = 534
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/40 (70%), Positives = 34/40 (85%)
Query: 131 MIQATYRGYLARKALCALRGLVKLQALIRGNLVRKQATAT 170
+IQ +RGYLAR+AL AL+GLVKLQAL+RG+ VRKQA T
Sbjct: 137 VIQTGFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMT 176
>AT4G10640.1 | chr4:6571999-6574312 FORWARD LENGTH=424
Length = 423
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 33/40 (82%)
Query: 131 MIQATYRGYLARKALCALRGLVKLQALIRGNLVRKQATAT 170
+IQ +RGYL+R+AL AL+G+VKLQAL+RGN VR QA T
Sbjct: 105 IIQTAFRGYLSRRALRALKGIVKLQALVRGNNVRNQAKLT 144
>AT5G62070.1 | chr5:24930057-24932451 REVERSE LENGTH=404
Length = 403
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 32/36 (88%)
Query: 132 IQATYRGYLARKALCALRGLVKLQALIRGNLVRKQA 167
IQ+ +RGYLAR+AL AL+ LVKLQAL+RG++VRKQ
Sbjct: 123 IQSAFRGYLARRALRALKALVKLQALVRGHIVRKQT 158
>AT3G52290.1 | chr3:19394441-19396196 FORWARD LENGTH=431
Length = 430
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 34/39 (87%)
Query: 132 IQATYRGYLARKALCALRGLVKLQALIRGNLVRKQATAT 170
IQ +RGY+AR+AL ALRGLV+L++L++G VR+QAT+T
Sbjct: 114 IQTAFRGYMARRALRALRGLVRLKSLVQGKCVRRQATST 152
>AT2G26180.1 | chr2:11143433-11144982 REVERSE LENGTH=417
Length = 416
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 32/39 (82%)
Query: 132 IQATYRGYLARKALCALRGLVKLQALIRGNLVRKQATAT 170
IQ +RG+LAR+AL AL+G+V+LQAL+RG VRKQA T
Sbjct: 90 IQTAFRGFLARRALRALKGIVRLQALVRGRQVRKQAAVT 128
>AT5G07240.1 | chr5:2272028-2274051 FORWARD LENGTH=402
Length = 401
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 32/36 (88%)
Query: 132 IQATYRGYLARKALCALRGLVKLQALIRGNLVRKQA 167
IQ+ +RGYLAR+AL AL+ LVKLQAL++G++VRKQ
Sbjct: 112 IQSAFRGYLARRALRALKALVKLQALVKGHIVRKQT 147
>AT1G51960.1 | chr1:19310355-19311683 FORWARD LENGTH=352
Length = 351
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/38 (71%), Positives = 32/38 (84%)
Query: 132 IQATYRGYLARKALCALRGLVKLQALIRGNLVRKQATA 169
IQ +RG LARKAL AL+G+VKLQAL+RG LVRK+A A
Sbjct: 106 IQKVFRGSLARKALRALKGIVKLQALVRGYLVRKRAAA 143
>AT5G13460.1 | chr5:4316323-4318247 FORWARD LENGTH=444
Length = 443
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/39 (66%), Positives = 31/39 (79%)
Query: 132 IQATYRGYLARKALCALRGLVKLQALIRGNLVRKQATAT 170
IQ +RG+LARKAL AL+G+VKLQA IRG VR+QA T
Sbjct: 117 IQTAFRGHLARKALRALKGIVKLQAYIRGRAVRRQAMTT 155
>AT1G14380.1 | chr1:4918279-4920761 REVERSE LENGTH=665
Length = 664
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 33/39 (84%)
Query: 132 IQATYRGYLARKALCALRGLVKLQALIRGNLVRKQATAT 170
+QAT+R + AR+A L+G+++LQA+IRG+LVR+QA AT
Sbjct: 100 VQATFRAHQARRAFRTLKGIIRLQAVIRGHLVRRQAIAT 138
>AT5G03040.1 | chr5:710380-712406 REVERSE LENGTH=462
Length = 461
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 33/40 (82%)
Query: 131 MIQATYRGYLARKALCALRGLVKLQALIRGNLVRKQATAT 170
+IQ +RGYLAR+AL A+RGLV+L+ L+ G++V++QA T
Sbjct: 120 LIQTIFRGYLARRALRAMRGLVRLKLLMEGSVVKRQAANT 159
>AT4G23060.1 | chr4:12087283-12090408 FORWARD LENGTH=485
Length = 484
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 33/38 (86%)
Query: 132 IQATYRGYLARKALCALRGLVKLQALIRGNLVRKQATA 169
IQ+ +RGYLA++AL AL+GLV+LQA++RG++ RK+ +
Sbjct: 173 IQSIFRGYLAKRALRALKGLVRLQAIVRGHIERKRMSV 210
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.130 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,745,617
Number of extensions: 129416
Number of successful extensions: 352
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 351
Number of HSP's successfully gapped: 19
Length of query: 340
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 241
Effective length of database: 8,392,385
Effective search space: 2022564785
Effective search space used: 2022564785
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 112 (47.8 bits)