BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0416500 Os10g0416500|AK059767
(286 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0416500 Similar to Chitinase 1 precursor (EC 3.2.1.14)... 568 e-162
Os10g0416800 Similar to Chitinase 2 (EC 3.2.1.14) (Tulip bu... 460 e-130
Os10g0416100 Class III chitinase RCB4 (EC 3.2.1.14) 254 4e-68
>Os10g0416500 Similar to Chitinase 1 precursor (EC 3.2.1.14) (Tulip bulb
chitinase-1) (TBC-1)
Length = 286
Score = 568 bits (1464), Expect = e-162, Method: Compositional matrix adjust.
Identities = 277/286 (96%), Positives = 277/286 (96%)
Query: 1 MVNGYLFREYIGAQFTGVRFSDVPVNPGLSFHFILAFAIDYFMATQSSKPAPANGVFAPY 60
MVNGYLFREYIGAQFTGVRFSDVPVNPGLSFHFILAFAIDYFMATQSSKPAPANGVFAPY
Sbjct: 1 MVNGYLFREYIGAQFTGVRFSDVPVNPGLSFHFILAFAIDYFMATQSSKPAPANGVFAPY 60
Query: 61 WDTANLSPXXXXXXXXXHPNLSVILALGGDTVQNTGVNATFAPTSSVDAWVRNAADSVSG 120
WDTANLSP HPNLSVILALGGDTVQNTGVNATFAPTSSVDAWVRNAADSVSG
Sbjct: 61 WDTANLSPAAVAAAKAAHPNLSVILALGGDTVQNTGVNATFAPTSSVDAWVRNAADSVSG 120
Query: 121 LIDAYGLDGVDVDYEHFAAGVDTFVECIGRLLTELKARHPNIATSIAPFEHPVVQRYYQP 180
LIDAYGLDGVDVDYEHFAAGVDTFVECIGRLLTELKARHPNIATSIAPFEHPVVQRYYQP
Sbjct: 121 LIDAYGLDGVDVDYEHFAAGVDTFVECIGRLLTELKARHPNIATSIAPFEHPVVQRYYQP 180
Query: 181 LWRRYAGVIDYVNFQFYGYGANTDVATYVMFYDEQAANYPGSKLLASFKTGNVTGLLSPE 240
LWRRYAGVIDYVNFQFYGYGANTDVATYVMFYDEQAANYPGSKLLASFKTGNVTGLLSPE
Sbjct: 181 LWRRYAGVIDYVNFQFYGYGANTDVATYVMFYDEQAANYPGSKLLASFKTGNVTGLLSPE 240
Query: 241 QGIAGAKELQRQGKLPGLFIWSADSSMVSSYKFEYETKAQEIVANH 286
QGIAGAKELQRQGKLPGLFIWSADSSMVSSYKFEYETKAQEIVANH
Sbjct: 241 QGIAGAKELQRQGKLPGLFIWSADSSMVSSYKFEYETKAQEIVANH 286
>Os10g0416800 Similar to Chitinase 2 (EC 3.2.1.14) (Tulip bulb chitinase-2)
(TBC-2)
Length = 288
Score = 460 bits (1183), Expect = e-130, Method: Compositional matrix adjust.
Identities = 228/290 (78%), Positives = 244/290 (84%), Gaps = 6/290 (2%)
Query: 1 MVNGYLFREYIGAQFTGVRFSDVPVNPGLSFHFILAFAIDYFMATQSSKPAPANGVFAPY 60
M NGYLFREYIGAQFTGVRFSDVP+NP LSF+FIL+FAIDY + PAP NGVF+PY
Sbjct: 1 MTNGYLFREYIGAQFTGVRFSDVPINPNLSFNFILSFAIDYTSPAGGATPAPTNGVFSPY 60
Query: 61 WDTANLSPXXXXXXXXXHPNLSVILALGGDTVQNTGVNATFAPTSSVDAWVRNAADSVSG 120
WDTANLSP HPN+SV++ LGGD+VQ+T F+PTS VD+WV NA SVSG
Sbjct: 61 WDTANLSPADVAAVKAAHPNVSVMVGLGGDSVQDT-AKVFFSPTS-VDSWVANAVASVSG 118
Query: 121 LIDAYGLDGVDVDYEHF----AAGVDTFVECIGRLLTELKARHPNIATSIAPFEHPVVQR 176
+IDAYGLDGVDVDYEHF AGVDTFVECIGRLLTELKARHPNI TSIAPFE VVQR
Sbjct: 119 IIDAYGLDGVDVDYEHFNDDGGAGVDTFVECIGRLLTELKARHPNITTSIAPFEDAVVQR 178
Query: 177 YYQPLWRRYAGVIDYVNFQFYGYGANTDVATYVMFYDEQAANYPGSKLLASFKTGNVTGL 236
YYQPLWRRYAGVID VNFQFYGYG NTDV TYVMFYDEQAANYPG K+LASFKTG+V GL
Sbjct: 179 YYQPLWRRYAGVIDLVNFQFYGYGDNTDVPTYVMFYDEQAANYPGGKVLASFKTGDVAGL 238
Query: 237 LSPEQGIAGAKELQRQGKLPGLFIWSADSSMVSSYKFEYETKAQEIVANH 286
L PEQGIAGAKELQRQGKLPGLFIWSADSS VSSY FEYE KAQEI+ANH
Sbjct: 239 LWPEQGIAGAKELQRQGKLPGLFIWSADSSKVSSYGFEYEIKAQEIIANH 288
>Os10g0416100 Class III chitinase RCB4 (EC 3.2.1.14)
Length = 307
Score = 254 bits (650), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 136/284 (47%), Positives = 185/284 (65%), Gaps = 7/284 (2%)
Query: 2 VNGYLFREYIGAQFTGVRFSDVPVNPGLSFHFILAFAIDYFMATQSSKPAPANGVFAPYW 61
VN LFR+YIGA F GV+F+DVP+NP + F FILAF IDY T+++ P P NG F +W
Sbjct: 26 VNSNLFRDYIGAIFNGVKFTDVPINPKVRFDFILAFIIDY--TTETNPPTPTNGKFNIFW 83
Query: 62 DTANLSPXXXXXXXXXHPNLSVILALGGDTVQNTGVNATFAPTSSVDAWVRNAADSVSGL 121
L+P +PN+ V +++GG TV + V F +SVD+WV NA +S++G+
Sbjct: 84 QNTVLTPSAVASIKQSNPNVRVAVSMGGATVNDRPV---FFNITSVDSWVNNAVESLTGI 140
Query: 122 IDAYGLDGVDVDYEHFAAGVDTFVECIGRLLTELKARHPNIATSIAPFEHPVVQRYYQPL 181
I LDG+D+DYE F DTF EC+GRL+T LKA+ SIAPF + VQR+Y L
Sbjct: 141 IQDNNLDGIDIDYEQFQVDPDTFTECVGRLITVLKAKGVIKFASIAPFGNAEVQRHYMAL 200
Query: 182 WRRYAGVIDYVNFQFYGYGANTDVATYVMFYDEQAANYPGSKLLASFKTGNVTGLLSPEQ 241
W +Y VIDY+NFQFY YGA+T A YV F+++Q NYPG +LASF T T + E
Sbjct: 201 WAKYGAVIDYINFQFYAYGASTTEAQYVDFFNQQIVNYPGGNILASFTTAATTTSVPVET 260
Query: 242 GIAGAKELQRQGKLPGLFIWSADSSMVSSYKFEYETKAQEIVAN 285
++ + LQ++GKL G+FIW+AD S S F+YET++Q ++AN
Sbjct: 261 ALSACRTLQKEGKLYGIFIWAADHS--RSQGFKYETESQALLAN 302
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,222,710
Number of extensions: 368579
Number of successful extensions: 732
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 727
Number of HSP's successfully gapped: 3
Length of query: 286
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 186
Effective length of database: 11,814,401
Effective search space: 2197478586
Effective search space used: 2197478586
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)