Os10g0416100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Class III chitinase RCB4 (EC 3.2.1.14).
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Os10g0416100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Class III chitinase RCB4 (EC 3.2.1.14).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 115.62 | 0.505 | 11.7 | -0.842 | 0.478 | -0.673 | -1.13 | 1.89 | -0.0597 | 12.4 | 10.01 | 119 | -- | -- |
| 121.49 | 0.513 | 11.7 | -0.868 | 0.512 | -0.691 | 0.477 | -- | -0.0733 | 12.4 | 10 | 118 | -- | -- |
| 118.61 | 0.507 | 11.7 | -0.931 | 0.465 | -0.709 | -- | 1.4 | -0.0247 | 11.8 | 10 | 129 | -- | -- |
| 122.67 | 0.516 | 11.7 | -0.875 | 0.492 | -0.654 | -- | -- | -0.0841 | 12.3 | 10 | 120 | -- | -- |
| 123.76 | 0.518 | 11.7 | -0.932 | -- | -0.342 | -- | 1.42 | -0.0626 | -- | 22.16 | 112 | -- | -- |
| 133.35 | 0.541 | 11.7 | -0.986 | 0.18 | -- | -0.348 | -- | -0.138 | 2.43 | -- | -- | -- | -- |
| 133.75 | 0.542 | 11.7 | -0.976 | 0.184 | -- | -- | -- | -0.137 | 2.97 | -- | -- | -- | -- |
| 127.64 | 0.526 | 11.7 | -0.92 | -- | -0.313 | -- | -- | -0.105 | -- | 14.03 | 114 | -- | -- |
| 143.57 | 0.558 | 11.7 | -- | 0.447 | -0.656 | -- | -- | -0.0476 | 12.5 | 10.01 | 129 | -- | -- |
| 135.69 | 0.544 | 11.7 | -0.969 | -- | -- | -- | -- | -0.132 | -- | -- | -- | -- | -- |
| 158.88 | 0.59 | 11.7 | -- | 0.164 | -- | -- | -- | -0.0278 | 2.94 | -- | -- | -- | -- |
| 150.53 | 0.571 | 11.6 | -- | -- | -0.372 | -- | -- | 0.0213 | -- | 20.24 | 106 | -- | -- |
| 160.44 | 0.591 | 11.7 | -- | -- | -- | -- | -- | -0.0244 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 105.96 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 9 |
| 2 | 106.94 | humidity | 80.0 | 90 | < th | dose independent | rect. | 8 | 9 |
| 5 | 107.37 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 5 | 15 |
| 6 | 107.53 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 5 | 15 |
| 16 | 108.73 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 5 | 10 |
| 18 | 108.82 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 5 | 12 |
| 19 | 108.87 | humidity | 80.0 | 90 | > th | dose independent | rect. | 5 | 14 |
| 26 | 109.12 | humidity | 80.0 | 270 | > th | dose independent | rect. | 3 | 12 |
| 29 | 109.23 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 9 | 9 |
| 30 | 109.24 | humidity | 80.0 | 90 | > th | dose independent | rect. | 5 | 12 |
| 34 | 109.35 | humidity | 80.0 | 90 | > th | dose independent | rect. | 5 | 10 |
| 53 | 110.02 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 5 | 15 |
| 86 | 110.62 | radiation | 1.0 | 270 | < th | dose independent | rect. | 4 | 15 |
| 96 | 110.85 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 20 | 9 |
| 103 | 110.98 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 15 |
| 113 | 111.30 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 3 | 14 |
| 116 | 111.37 | humidity | 50.0 | 90 | > th | dose independent | rect. | 5 | 15 |
| 122 | 111.50 | radiation | 1.0 | 90 | > th | dose independent | rect. | 9 | 8 |
| 141 | 111.72 | radiation | 1.0 | 270 | > th | dose independent | sin | 0 | NA |
| 143 | 111.74 | radiation | 1.0 | 270 | < th | dose independent | sin | 0 | NA |
| 156 | 111.87 | temperature | 15.0 | 90 | > th | dose independent | rect. | 9 | 8 |
| 164 | 111.92 | humidity | 80.0 | 270 | > th | dose independent | sin | 3 | NA |
| 166 | 111.92 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 20 | 21 |
| 195 | 112.35 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 9 |
| 202 | 112.43 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 24 | 17 |
| 254 | 112.85 | radiation | 1.0 | 270 | < th | dose dependent | sin | 0 | NA |
| 300 | 113.15 | humidity | 80.0 | 270 | < th | dose independent | sin | 3 | NA |
| 313 | 113.25 | temperature | 15.0 | 90 | > th | dose independent | rect. | 9 | 20 |
| 317 | 113.25 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 20 | 22 |
| 336 | 113.39 | humidity | 80.0 | 90 | < th | dose independent | sin | 1 | NA |
| 377 | 113.50 | humidity | 70.0 | 10 | > th | dose dependent | sin | 23 | NA |
| 397 | 113.57 | radiation | 10.0 | 30 | < th | dose dependent | sin | 20 | NA |
| 405 | 113.61 | humidity | 70.0 | 90 | > th | dose dependent | sin | 0 | NA |
| 448 | 113.81 | humidity | 70.0 | 270 | > th | dose dependent | sin | 3 | NA |
| 520 | 114.05 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 16 | 3 |
| 563 | 114.17 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 9 | 8 |
| 605 | 114.28 | radiation | 10.0 | 90 | > th | dose independent | sin | 22 | NA |
| 686 | 114.63 | temperature | 15.0 | 90 | > th | dose independent | rect. | 20 | 9 |
| 692 | 114.64 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 693 | 114.65 | humidity | 90.0 | 10 | < th | dose dependent | sin | 0 | NA |
| 709 | 114.74 | wind | 9.0 | 90 | < th | dose independent | rect. | 20 | 9 |
| 711 | 114.74 | temperature | 30.0 | 90 | < th | dose independent | rect. | 20 | 9 |
| 712 | 114.74 | humidity | 50.0 | 90 | > th | dose independent | rect. | 20 | 9 |
| 716 | 114.74 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 20 | 9 |
| 717 | 114.74 | radiation | 20.0 | 90 | < th | dose independent | rect. | 20 | 9 |
| 720 | 114.74 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 15 |
| 721 | 114.74 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 5 | 15 |
| 728 | 114.76 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 20 | 9 |
| 740 | 114.81 | radiation | 1.0 | 90 | < th | dose independent | rect. | 20 | 9 |
| 762 | 114.88 | radiation | 1.0 | 270 | > th | dose independent | rect. | 4 | 12 |
| 782 | 114.92 | radiation | 30.0 | 90 | < th | dose independent | rect. | 17 | 16 |
| 814 | 115.02 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 20 | 9 |
| 815 | 115.02 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 20 | 9 |
| 852 | 115.15 | wind | 9.0 | 90 | < th | dose dependent | rect. | 9 | 8 |
| 880 | 115.25 | radiation | 1.0 | 270 | < th | dose independent | rect. | 7 | 12 |
| 903 | 115.35 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 15 |
| 905 | 115.35 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 15 |
| 914 | 115.38 | wind | 9.0 | 90 | < th | dose independent | rect. | 5 | 15 |
| 946 | 115.47 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 7 | 12 |
| 971 | 115.52 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 17 | 16 |
| 973 | 115.53 | wind | 7.0 | 14400 | > th | dose independent | rect. | 15 | 4 |
| 975 | 115.53 | wind | 7.0 | 90 | < th | dose independent | rect. | 9 | 8 |
| 981 | 115.54 | humidity | 60.0 | 43200 | > th | dose dependent | rect. | 5 | 9 |
| 994 | 115.57 | wind | 7.0 | 14400 | < th | dose independent | rect. | 15 | 4 |