BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0416100 Os10g0416100|AK071453
(307 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0416100 Class III chitinase RCB4 (EC 3.2.1.14) 538 e-153
Os10g0416800 Similar to Chitinase 2 (EC 3.2.1.14) (Tulip bu... 268 5e-72
Os10g0416500 Similar to Chitinase 1 precursor (EC 3.2.1.14)... 254 4e-68
>Os10g0416100 Class III chitinase RCB4 (EC 3.2.1.14)
Length = 307
Score = 538 bits (1387), Expect = e-153, Method: Compositional matrix adjust.
Identities = 266/284 (93%), Positives = 266/284 (93%)
Query: 24 TAVNSNLFRDYIGAIFNGVKFTDVPINPKVRFDFILAFIIDYXXXXXXXXXXXGKFNIFW 83
TAVNSNLFRDYIGAIFNGVKFTDVPINPKVRFDFILAFIIDY GKFNIFW
Sbjct: 24 TAVNSNLFRDYIGAIFNGVKFTDVPINPKVRFDFILAFIIDYTTETNPPTPTNGKFNIFW 83
Query: 84 QNTVLTPSAVASIKQSNPNVRVAVSMGGATVNDRPVFFNITSVDSWVNNAVESLTGIIQD 143
QNTVLTPSAVASIKQSNPNVRVAVSMGGATVNDRPVFFNITSVDSWVNNAVESLTGIIQD
Sbjct: 84 QNTVLTPSAVASIKQSNPNVRVAVSMGGATVNDRPVFFNITSVDSWVNNAVESLTGIIQD 143
Query: 144 NNLDGIDIDYEQFQVDPDTFTECVGRLITVLKAKGVIKFASIAPFGNAEVQRHYMALWAK 203
NNLDGIDIDYEQFQVDPDTFTECVGRLITVLKAKGVIKFASIAPFGNAEVQRHYMALWAK
Sbjct: 144 NNLDGIDIDYEQFQVDPDTFTECVGRLITVLKAKGVIKFASIAPFGNAEVQRHYMALWAK 203
Query: 204 YGAVIDYINFQFYAYGASTTEAQYVDFFNQQIVNYPGGNILASFXXXXXXXSVPVETALS 263
YGAVIDYINFQFYAYGASTTEAQYVDFFNQQIVNYPGGNILASF SVPVETALS
Sbjct: 204 YGAVIDYINFQFYAYGASTTEAQYVDFFNQQIVNYPGGNILASFTTAATTTSVPVETALS 263
Query: 264 ACRTLQKEGKLYGIFIWAADHSRSQGFKYETESQALLANATISY 307
ACRTLQKEGKLYGIFIWAADHSRSQGFKYETESQALLANATISY
Sbjct: 264 ACRTLQKEGKLYGIFIWAADHSRSQGFKYETESQALLANATISY 307
>Os10g0416800 Similar to Chitinase 2 (EC 3.2.1.14) (Tulip bulb chitinase-2)
(TBC-2)
Length = 288
Score = 268 bits (684), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 139/285 (48%), Positives = 186/285 (65%), Gaps = 9/285 (3%)
Query: 27 NSNLFRDYIGAIFNGVKFTDVPINPKVRFDFILAFIIDYXXXX--XXXXXXXGKFNIFWQ 84
N LFR+YIGA F GV+F+DVPINP + F+FIL+F IDY G F+ +W
Sbjct: 3 NGYLFREYIGAQFTGVRFSDVPINPNLSFNFILSFAIDYTSPAGGATPAPTNGVFSPYWD 62
Query: 85 NTVLTPSAVASIKQSNPNVRVAVSMGGATVNDR-PVFFNITSVDSWVNNAVESLTGIIQD 143
L+P+ VA++K ++PNV V V +GG +V D VFF+ TSVDSWV NAV S++GII
Sbjct: 63 TANLSPADVAAVKAAHPNVSVMVGLGGDSVQDTAKVFFSPTSVDSWVANAVASVSGIIDA 122
Query: 144 NNLDGIDIDYEQFQVDP----DTFTECVGRLITVLKAKGVIKFASIAPFGNAEVQRHYMA 199
LDG+D+DYE F D DTF EC+GRL+T LKA+ SIAPF +A VQR+Y
Sbjct: 123 YGLDGVDVDYEHFNDDGGAGVDTFVECIGRLLTELKARHPNITTSIAPFEDAVVQRYYQP 182
Query: 200 LWAKYGAVIDYINFQFYAYGASTTEAQYVDFFNQQIVNYPGGNILASFXXXXXXXSVPVE 259
LW +Y VID +NFQFY YG +T YV F+++Q NYPGG +LASF + E
Sbjct: 183 LWRRYAGVIDLVNFQFYGYGDNTDVPTYVMFYDEQAANYPGGKVLASFKTGDVAGLLWPE 242
Query: 260 TALSACRTLQKEGKLYGIFIWAADHSR--SQGFKYETESQALLAN 302
++ + LQ++GKL G+FIW+AD S+ S GF+YE ++Q ++AN
Sbjct: 243 QGIAGAKELQRQGKLPGLFIWSADSSKVSSYGFEYEIKAQEIIAN 287
>Os10g0416500 Similar to Chitinase 1 precursor (EC 3.2.1.14) (Tulip bulb
chitinase-1) (TBC-1)
Length = 286
Score = 254 bits (650), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 134/284 (47%), Positives = 183/284 (64%), Gaps = 7/284 (2%)
Query: 26 VNSNLFRDYIGAIFNGVKFTDVPINPKVRFDFILAFIIDY--XXXXXXXXXXXGKFNIFW 83
VN LFR+YIGA F GV+F+DVP+NP + F FILAF IDY G F +W
Sbjct: 2 VNGYLFREYIGAQFTGVRFSDVPVNPGLSFHFILAFAIDYFMATQSSKPAPANGVFAPYW 61
Query: 84 QNTVLTPSAVASIKQSNPNVRVAVSMGGATVNDRPV---FFNITSVDSWVNNAVESLTGI 140
L+P+AVA+ K ++PN+ V +++GG TV + V F +SVD+WV NA +S++G+
Sbjct: 62 DTANLSPAAVAAAKAAHPNLSVILALGGDTVQNTGVNATFAPTSSVDAWVRNAADSVSGL 121
Query: 141 IQDNNLDGIDIDYEQFQVDPDTFTECVGRLITVLKAKGVIKFASIAPFGNAEVQRHYMAL 200
I LDG+D+DYE F DTF EC+GRL+T LKA+ SIAPF + VQR+Y L
Sbjct: 122 IDAYGLDGVDVDYEHFAAGVDTFVECIGRLLTELKARHPNIATSIAPFEHPVVQRYYQPL 181
Query: 201 WAKYGAVIDYINFQFYAYGASTTEAQYVDFFNQQIVNYPGGNILASFXXXXXXXSVPVET 260
W +Y VIDY+NFQFY YGA+T A YV F+++Q NYPG +LASF + E
Sbjct: 182 WRRYAGVIDYVNFQFYGYGANTDVATYVMFYDEQAANYPGSKLLASFKTGNVTGLLSPEQ 241
Query: 261 ALSACRTLQKEGKLYGIFIWAADHS--RSQGFKYETESQALLAN 302
++ + LQ++GKL G+FIW+AD S S F+YET++Q ++AN
Sbjct: 242 GIAGAKELQRQGKLPGLFIWSADSSMVSSYKFEYETKAQEIVAN 285
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.136 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,211,769
Number of extensions: 285028
Number of successful extensions: 530
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 523
Number of HSP's successfully gapped: 3
Length of query: 307
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 206
Effective length of database: 11,762,187
Effective search space: 2423010522
Effective search space used: 2423010522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)